Multiple platform build/check report for BioC 3.20 - BUILD results for BiocBook on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4451
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4417
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4456
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4489
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4436
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4435
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BiocBook on lconway

To the developers/maintainers of the BiocBook package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocBook.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BiocBook

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocBook

StartedAt: 2024-09-26 16:08:59 -0400 (Thu, 26 Sep 2024)

EndedAt: 2024-09-26 16:09:02 -0400 (Thu, 26 Sep 2024)

EllapsedTime: 3.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocBook
###
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* checking for file ‘BiocBook/DESCRIPTION’ ... OK
* preparing ‘BiocBook’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘BiocBook’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gert/libs/gert.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gert/libs/gert.so, 0x0006): Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/libgit2/1.7.1/lib/libgit2.1.7.1.dylib'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libssl.3.dylib' (no such file), '/usr/local/jdk-21.jdk/Contents/Home/lib/server/libssl.3.dylib' (no such file)
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘BiocBook’
* removing ‘/private/tmp/Rtmp8ERsKe/Rinstbcb831dca51a/BiocBook’
      -----------------------------------
ERROR: package installation failed