Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:44 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 222/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BiRewire 3.37.0 (landing page) Andrea Gobbi
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the BiRewire package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BiRewire |
Version: 3.37.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire |
StartedAt: 2024-08-20 15:02:37 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 15:02:40 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 3.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL BiRewire ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘BiRewire’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BiRewire.c -o BiRewire.o BiRewire.c:149:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:221:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:229:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:280:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:332:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:339:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:402:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:454:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:461:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:588:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:652:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:737:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:844:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:893:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:962:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:1096:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:1144:37: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld BiRewire.c:1183:35: warning: format specifies type 'int' but the argument has type 'time_t' (aka 'long') [-Wformat] Rprintf("DONE in %d seconds \n",-(tin-tfin)); ~~ ^~~~~~~~~~~ %ld 18 warnings generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interface.c -o interface.o interface.c:28:23: warning: variable 'e' set but not used [-Wunused-but-set-variable] size_t i,dim,nc,nr,j,e=0; ^ interface.c:105:68: warning: data argument not used by format string [-Wformat-extra-args] warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger' #define asInteger Rf_asInteger ^ interface.c:147:68: warning: data argument not used by format string [-Wformat-extra-args] warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger' #define asInteger Rf_asInteger ^ interface.c:167:23: warning: variable 'e' set but not used [-Wunused-but-set-variable] size_t i,dim,nc,nr,j,e=0; ^ interface.c:252:68: warning: data argument not used by format string [-Wformat-extra-args] warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger' #define asInteger Rf_asInteger ^ interface.c:296:68: warning: data argument not used by format string [-Wformat-extra-args] warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ /Library/Frameworks/R.framework/Resources/include/Rinternals.h:879:20: note: expanded from macro 'asInteger' #define asInteger Rf_asInteger ^ 6 warnings generated. clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BiRewire.so BiRewire.o interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-BiRewire/00new/BiRewire/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiRewire)