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This page was generated on 2024-07-06 11:39 -0400 (Sat, 06 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4643
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4442
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4391
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 3833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 158/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BgeeCall 1.21.0  (landing page)
Julien Wollbrett
Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024)
git_url: https://git.bioconductor.org/packages/BgeeCall
git_branch: devel
git_last_commit: 7441e73
git_last_commit_date: 2024-04-30 11:20:00 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino6Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BgeeCall on palomino6

To the developers/maintainers of the BgeeCall package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BgeeCall.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BgeeCall
Version: 1.21.0
Command: chmod a+r BgeeCall -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BgeeCall
StartedAt: 2024-07-05 16:43:14 -0400 (Fri, 05 Jul 2024)
EndedAt: 2024-07-05 16:44:54 -0400 (Fri, 05 Jul 2024)
EllapsedTime: 100.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r BgeeCall -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BgeeCall
###
##############################################################################
##############################################################################


* checking for file 'BgeeCall/DESCRIPTION' ... OK
* preparing 'BgeeCall':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'bgeecall-manual.Rmd' using rmarkdown
trying URL 'https://www.bgee.org/ftp/intergenic/1.0/ref_intergenic/6239_intergenic.fa.gz'
Content type 'application/x-gzip' length 4054193 bytes (3.9 MB)
==================================================
downloaded 3.9 MB


Quitting from lines 226-227 [unnamed-chunk-18] (bgeecall-manual.Rmd)
Error: processing vignette 'bgeecall-manual.Rmd' failed with diagnostics:
cannot open the connection to 'https://zenodo.org/api/records/?communities=bgee_intergenic'
--- failed re-building 'bgeecall-manual.Rmd'

SUMMARY: processing the following file failed:
  'bgeecall-manual.Rmd'

Error: Vignette re-building failed.
Execution halted