Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-06 11:38 -0400 (Sat, 06 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 55/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AlphaBeta 1.19.0 (landing page) Yadollah Shahryary Dizaji
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the AlphaBeta package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlphaBeta.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: AlphaBeta |
Version: 1.19.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings AlphaBeta_1.19.0.tar.gz |
StartedAt: 2024-07-05 20:20:43 -0400 (Fri, 05 Jul 2024) |
EndedAt: 2024-07-05 20:30:27 -0400 (Fri, 05 Jul 2024) |
EllapsedTime: 584.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AlphaBeta.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings AlphaBeta_1.19.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/AlphaBeta.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘AlphaBeta/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘AlphaBeta’ version ‘1.19.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘AlphaBeta’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ABplot: no visible binding for global variable ‘delta.t’ ABplot: no visible binding for global variable ‘div.obs’ BOOTmodel : LSE_intercept: no visible binding for global variable ‘sel’ BOOTmodel: no visible binding for global variable ‘sel’ BOOTmodel: multiple local function definitions for ‘divergence’ with different formal arguments plotPedigree: no visible binding for global variable ‘meth’ plotPedigree: no visible binding for global variable ‘V1’ plotPedigree: no visible binding for global variable ‘V2’ Undefined global functions or variables: V1 V2 delta.t div.obs meth sel * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed BOOTmodel 81.966 0.077 82.042 ABselectUU 78.236 0.111 78.349 ABselectMM 63.200 0.124 63.324 ABneutral 51.443 0.248 51.692 ABselectUUSOMA 5.452 0.012 5.464 ABneutralSOMA 4.987 0.040 5.027 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/AlphaBeta.Rcheck/00check.log’ for details.
AlphaBeta.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL AlphaBeta ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘AlphaBeta’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AlphaBeta)
AlphaBeta.Rcheck/AlphaBeta-Ex.timings
name | user | system | elapsed | |
ABneutral | 51.443 | 0.248 | 51.692 | |
ABneutralSOMA | 4.987 | 0.040 | 5.027 | |
ABnull | 0.01 | 0.00 | 0.01 | |
ABplot | 0.255 | 0.016 | 0.271 | |
ABselectMM | 63.200 | 0.124 | 63.324 | |
ABselectMMSOMA | 3.737 | 0.008 | 3.746 | |
ABselectUU | 78.236 | 0.111 | 78.349 | |
ABselectUUSOMA | 5.452 | 0.012 | 5.464 | |
BOOTmodel | 81.966 | 0.077 | 82.042 | |
FtestRSS | 0.011 | 0.000 | 0.011 | |
buildPedigree | 1.017 | 0.039 | 4.414 | |
dMatrix | 0.112 | 0.009 | 0.121 | |
plotPedigree | 0.071 | 0.001 | 0.071 | |
rc.meth.lvl | 0.676 | 0.004 | 3.989 | |