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BioC experimental data: BUILD BIN report for systemPipeRdata on moscato1

This page was generated on 2016-04-20 20:26:55 -0700 (Wed, 20 Apr 2016).

Package 237/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeRdata 1.0.1
Thomas Girke
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/systemPipeRdata
Last Changed Rev: 3517 / Revision: 3730
Last Changed Date: 2015-12-07 11:38:46 -0800 (Mon, 07 Dec 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK [ OK ]

Summary

Package: systemPipeRdata
Version: 1.0.1
Command: cd systemPipeRdata.buildbin-libdir/systemPipeRdata && zip -r ../../systemPipeRdata_1.0.1.zip . & cd ../..
StartedAt: 2016-04-20 18:28:45 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 18:37:52 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 547.9 seconds
RetCode: 0
Status:  OK  
PackageFile: systemPipeRdata_1.0.1.zip
PackageFileSize: 408.6 MiB

Command output

##############################################################################
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###
### Running command:
###
###   cd systemPipeRdata.buildbin-libdir/systemPipeRdata && zip -r ../../systemPipeRdata_1.0.1.zip . & cd ../..
###
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##############################################################################


Scanning files  .
  adding: DESCRIPTION (188 bytes security) (deflated 44%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/index.html (188 bytes security) (deflated 59%)
  adding: doc/systemPipeRdata.html (188 bytes security) (deflated 63%)
  adding: doc/systemPipeRdata.Rmd (188 bytes security) (deflated 61%)
  adding: extdata/ (208 bytes security) (stored 0%)
  adding: extdata/annotation/ (208 bytes security) (stored 0%)
  adding: extdata/annotation/GO/ (208 bytes security) (stored 0%)
  adding: extdata/annotation/GO/catdb.RData (188 bytes security) (deflated 6%)
  adding: extdata/annotation/GO/GOannotationsBiomart_mod.txt (188 bytes security) (deflated 90%)
  adding: extdata/annotation/tair10.dict (188 bytes security) (deflated 69%)
  adding: extdata/annotation/tair10.fasta (188 bytes security) (deflated 70%)
  adding: extdata/annotation/tair10.fasta.fai (188 bytes security) (deflated 57%)
  adding: extdata/annotation/tair10.gff (188 bytes security) (deflated 88%)
  adding: extdata/annotation/tair10.sqlite (188 bytes security) (deflated 63%)
  adding: extdata/fastq/ (208 bytes security) (stored 0%)
  adding: extdata/fastq/SRR446027_1.fastq.gz (188 bytes security) (deflated 0%)
  adding: extdata/fastq/SRR446027_2.fastq.gz (188 bytes security) (deflated 0%)
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  adding: extdata/fastq/SRR446030_1.fastq.gz (188 bytes security) (deflated 0%)
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  adding: extdata/fastq/SRR446031_1.fastq.gz (188 bytes security) (deflated 0%)
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  adding: extdata/fastq/SRR446032_1.fastq.gz (188 bytes security) (deflated 0%)
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  adding: extdata/fastq/SRR446041_1.fastq.gz (188 bytes security) (deflated 0%)
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  adding: extdata/fastq/SRR446044_2.fastq.gz (188 bytes security) (deflated 0%)
  adding: extdata/param/ (208 bytes security) (stored 0%)
  adding: extdata/param/.BatchJobs.R (188 bytes security) (deflated 19%)
  adding: extdata/param/annotate_peaks.param (188 bytes security) (deflated 44%)
  adding: extdata/param/annotate_vars.param (188 bytes security) (deflated 43%)
  adding: extdata/param/bibtex.bib (188 bytes security) (deflated 66%)
  adding: extdata/param/bowtiePE.param (188 bytes security) (deflated 42%)
  adding: extdata/param/bowtieSE.param (188 bytes security) (deflated 41%)
  adding: extdata/param/bwa.param (188 bytes security) (deflated 43%)
  adding: extdata/param/count_rangesets.param (188 bytes security) (deflated 44%)
  adding: extdata/param/filter_gatk.param (188 bytes security) (deflated 43%)
  adding: extdata/param/filter_sambcf.param (188 bytes security) (deflated 43%)
  adding: extdata/param/filter_vartools.param (188 bytes security) (deflated 43%)
  adding: extdata/param/gatk.param (188 bytes security) (deflated 50%)
  adding: extdata/param/gatk_run.sh (188 bytes security) (deflated 55%)
  adding: extdata/param/gsnap.param (188 bytes security) (deflated 43%)
  adding: extdata/param/macs2.param (188 bytes security) (deflated 45%)
  adding: extdata/param/macs2_noinput.param (188 bytes security) (deflated 44%)
  adding: extdata/param/Makefile (188 bytes security) (deflated 62%)
  adding: extdata/param/Makefile_chipseq (188 bytes security) (deflated 62%)
  adding: extdata/param/Makefile_rnaseq (188 bytes security) (deflated 62%)
  adding: extdata/param/Makefile_varseq (188 bytes security) (deflated 62%)
  adding: extdata/param/rsubread.param (188 bytes security) (deflated 43%)
  adding: extdata/param/rundiff.param (188 bytes security) (deflated 43%)
  adding: extdata/param/sambcf.param (188 bytes security) (deflated 49%)
  adding: extdata/param/sambcf_run.sh (188 bytes security) (deflated 54%)
  adding: extdata/param/targets.txt (188 bytes security) (deflated 66%)
  adding: extdata/param/targetsPE.txt (188 bytes security) (deflated 71%)
  adding: extdata/param/targetsPE_chip.txt (188 bytes security) (deflated 71%)
  adding: extdata/param/targets_chip.txt (188 bytes security) (deflated 65%)
  adding: extdata/param/tophat.param (188 bytes security) (deflated 42%)
  adding: extdata/param/tophatV1.param (188 bytes security) (deflated 43%)
  adding: extdata/param/torque.tmpl (188 bytes security) (deflated 49%)
  adding: extdata/param/trim.param (188 bytes security) (deflated 43%)
  adding: extdata/param/trimPE.param (188 bytes security) (deflated 49%)
  adding: extdata/param/vartools.param (188 bytes security) (deflated 43%)
  adding: extdata/workflows/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/chipseq/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/chipseq/data/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/chipseq/data/dummyfile (188 bytes security) (deflated 4%)
  adding: extdata/workflows/chipseq/results/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/chipseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
  adding: extdata/workflows/chipseq/results/seqlogo.pdf (188 bytes security) (deflated 6%)
  adding: extdata/workflows/chipseq/systemPipeChIPseq.pdf (188 bytes security) (deflated 5%)
  adding: extdata/workflows/chipseq/systemPipeChIPseq.R (188 bytes security) (deflated 73%)
  adding: extdata/workflows/chipseq/systemPipeChIPseq.Rnw (188 bytes security) (deflated 65%)
  adding: extdata/workflows/riboseq/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/riboseq/data/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/riboseq/data/dummyfile (188 bytes security) (deflated 4%)
  adding: extdata/workflows/riboseq/results/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/riboseq/results/DEGcounts.pdf (188 bytes security) (deflated 11%)
  adding: extdata/workflows/riboseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
  adding: extdata/workflows/riboseq/results/featureCounts.pdf (188 bytes security) (deflated 7%)
  adding: extdata/workflows/riboseq/results/featureCounts2.pdf (188 bytes security) (deflated 21%)
  adding: extdata/workflows/riboseq/results/featurePlot.pdf (188 bytes security) (deflated 12%)
  adding: extdata/workflows/riboseq/results/GOslimbarplotMF.pdf (188 bytes security) (deflated 10%)
  adding: extdata/workflows/riboseq/results/heatmap1.pdf (188 bytes security) (deflated 8%)
  adding: extdata/workflows/riboseq/results/sample_tree.pdf (188 bytes security) (deflated 10%)
  adding: extdata/workflows/riboseq/results/vennplot.pdf (188 bytes security) (deflated 4%)
  adding: extdata/workflows/riboseq/systemPipeRIBOseq.pdf (188 bytes security) (deflated 9%)
  adding: extdata/workflows/riboseq/systemPipeRIBOseq.R (188 bytes security) (deflated 75%)
  adding: extdata/workflows/riboseq/systemPipeRIBOseq.Rnw (188 bytes security) (deflated 67%)
  adding: extdata/workflows/rnaseq/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/rnaseq/data/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/rnaseq/data/dummyfile (188 bytes security) (deflated 4%)
  adding: extdata/workflows/rnaseq/results/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/rnaseq/results/DEGcounts.pdf (188 bytes security) (deflated 11%)
  adding: extdata/workflows/rnaseq/results/fastqReport.pdf (188 bytes security) (deflated 7%)
  adding: extdata/workflows/rnaseq/results/GOslimbarplotMF.pdf (188 bytes security) (deflated 10%)
  adding: extdata/workflows/rnaseq/results/heatmap1.pdf (188 bytes security) (deflated 8%)
  adding: extdata/workflows/rnaseq/results/sample_tree.pdf (188 bytes security) (deflated 10%)
  adding: extdata/workflows/rnaseq/results/vennplot.pdf (188 bytes security) (deflated 4%)
  adding: extdata/workflows/rnaseq/systemPipeRNAseq.pdf (188 bytes security) (deflated 8%)
  adding: extdata/workflows/rnaseq/systemPipeRNAseq.R (188 bytes security) (deflated 70%)
  adding: extdata/workflows/rnaseq/systemPipeRNAseq.Rnw (188 bytes security) (deflated 63%)
  adding: extdata/workflows/varseq/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/varseq/data/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/varseq/data/dummyfile (188 bytes security) (deflated 4%)
  adding: extdata/workflows/varseq/results/ (208 bytes security) (stored 0%)
  adding: extdata/workflows/varseq/results/dummyfile (188 bytes security) (deflated 4%)
  adding: extdata/workflows/varseq/systemPipeVARseq.pdf (188 bytes security) (deflated 6%)
  adding: extdata/workflows/varseq/systemPipeVARseq.R (188 bytes security) (deflated 66%)
  adding: extdata/workflows/varseq/systemPipeVARseq.Rnw (188 bytes security) (deflated 72%)
  adding: extdata/workflows/varseq/systemPipeVARseq_Fct.R (188 bytes security) (deflated 28%)
  adding: extdata/workflows/varseq/systemPipeVARseq_single.pdf (188 bytes security) (deflated 3%)
  adding: extdata/workflows/varseq/systemPipeVARseq_single.R (188 bytes security) (deflated 64%)
  adding: extdata/workflows/varseq/systemPipeVARseq_single.Rnw (188 bytes security) (deflated 70%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 30%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/systemPipeRdata.rdb (188 bytes security) (stored 0%)
  adding: help/systemPipeRdata.rdx (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 54%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 27%)
  adding: MD5 (188 bytes security) (deflated 61%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
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  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 9%)
  adding: NEWS (188 bytes security) (deflated 26%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/systemPipeRdata (188 bytes security) (deflated 41%)
  adding: R/systemPipeRdata.rdb (188 bytes security) (deflated 3%)
  adding: R/systemPipeRdata.rdx (188 bytes security) (stored 0%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/test_samples.R (188 bytes security) (deflated 22%)