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BioC experimental data: CHECK report for geneLenDataBase on linux1.bioconductor.org

This page was generated on 2015-10-24 18:52:32 -0400 (Sat, 24 Oct 2015).

Package 98/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.6.0
Nadia Davidson
Snapshot Date: 2015-10-24 12:50:03 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3460 / Revision: 3473
Last Changed Date: 2015-10-13 16:14:23 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.6.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.6.0.tar.gz
StartedAt: 2015-10-24 14:53:12 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 14:58:05 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 293.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [16s/16s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [63s/64s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0850.0120.098
anoCar1.genscan.LENGTH0.0430.0160.059
anoCar1.xenoRefGene.LENGTH1.1050.0041.108
anoGam1.ensGene.LENGTH0.0960.0120.108
anoGam1.geneid.LENGTH0.0710.0240.096
anoGam1.genscan.LENGTH0.0510.0280.083
apiMel1.genscan.LENGTH0.0590.0120.070
apiMel2.ensGene.LENGTH0.1360.0280.163
apiMel2.geneid.LENGTH0.0720.0240.096
apiMel2.genscan.LENGTH0.0490.0160.065
aplCal1.xenoRefGene.LENGTH0.5670.0040.571
bosTau2.geneSymbol.LENGTH0.0740.0040.078
bosTau2.geneid.LENGTH0.6570.0000.657
bosTau2.genscan.LENGTH0.1170.0200.137
bosTau2.refGene.LENGTH0.0690.0080.077
bosTau2.sgpGene.LENGTH0.1450.0000.145
bosTau3.ensGene.LENGTH0.1300.0240.155
bosTau3.geneSymbol.LENGTH0.0610.0080.069
bosTau3.geneid.LENGTH0.2200.0120.233
bosTau3.genscan.LENGTH0.1050.0080.113
bosTau3.refGene.LENGTH0.0520.0150.069
bosTau3.sgpGene.LENGTH0.1380.0230.163
bosTau4.ensGene.LENGTH0.1940.0310.224
bosTau4.geneSymbol.LENGTH0.0520.0120.069
bosTau4.genscan.LENGTH0.1250.0160.141
bosTau4.nscanGene.LENGTH0.0520.0080.060
bosTau4.refGene.LENGTH0.0410.0240.064
braFlo1.xenoRefGene.LENGTH0.5980.0030.606
caeJap1.xenoRefGene.LENGTH0.7090.0000.711
caePb1.xenoRefGene.LENGTH0.4070.0030.415
caePb2.xenoRefGene.LENGTH0.4890.0080.498
caeRem2.xenoRefGene.LENGTH0.3240.0000.324
caeRem3.xenoRefGene.LENGTH0.7100.0040.716
calJac1.genscan.LENGTH0.1150.0200.134
calJac1.nscanGene.LENGTH0.1120.0000.113
calJac1.xenoRefGene.LENGTH0.6240.0000.628
canFam1.ensGene.LENGTH0.4320.0000.432
canFam1.geneSymbol.LENGTH0.0060.0000.006
canFam1.genscan.LENGTH0.0570.0000.057
canFam1.nscanGene.LENGTH0.0510.0040.055
canFam1.refGene.LENGTH0.0070.0000.006
canFam1.xenoRefGene.LENGTH0.5590.0000.559
canFam2.ensGene.LENGTH0.1650.0040.169
canFam2.geneSymbol.LENGTH0.0060.0000.007
canFam2.genscan.LENGTH0.0580.0000.058
canFam2.nscanGene.LENGTH0.0820.0080.090
canFam2.refGene.LENGTH0.010.000.01
canFam2.xenoRefGene.LENGTH0.7750.0040.780
cavPor3.ensGene.LENGTH0.4250.0120.438
cavPor3.genscan.LENGTH0.0810.0040.086
cavPor3.nscanGene.LENGTH0.0610.0000.062
cavPor3.xenoRefGene.LENGTH0.5150.0040.520
cb1.xenoRefGene.LENGTH0.4040.0000.404
cb3.xenoRefGene.LENGTH0.3580.0000.360
ce2.geneSymbol.LENGTH0.0880.0280.116
ce2.geneid.LENGTH0.0530.0000.053
ce2.refGene.LENGTH0.0640.0240.088
ce4.geneSymbol.LENGTH0.0660.0240.090
ce4.refGene.LENGTH0.0650.0200.085
ce4.xenoRefGene.LENGTH0.1090.0000.110
ce6.ensGene.LENGTH0.0810.0080.089
ce6.geneSymbol.LENGTH0.0670.0240.091
ce6.refGene.LENGTH0.0630.0240.087
ce6.xenoRefGene.LENGTH0.0720.0000.071
ci1.geneSymbol.LENGTH0.0030.0000.007
ci1.refGene.LENGTH0.0060.0000.006
ci1.xenoRefGene.LENGTH0.1420.0000.142
ci2.ensGene.LENGTH0.3940.0000.394
ci2.geneSymbol.LENGTH0.0020.0040.006
ci2.refGene.LENGTH0.0050.0000.005
ci2.xenoRefGene.LENGTH0.2220.0000.222
danRer3.ensGene.LENGTH0.0830.0200.103
danRer3.geneSymbol.LENGTH0.0560.0120.068
danRer3.refGene.LENGTH0.0470.0160.064
danRer4.ensGene.LENGTH0.0960.0000.095
danRer4.geneSymbol.LENGTH0.0470.0200.067
danRer4.genscan.LENGTH0.0930.0000.092
danRer4.nscanGene.LENGTH0.0780.0200.098
danRer4.refGene.LENGTH0.0480.0160.064
danRer5.ensGene.LENGTH0.0930.0040.098
danRer5.geneSymbol.LENGTH0.0550.0080.063
danRer5.refGene.LENGTH0.0470.0120.059
danRer5.vegaGene.LENGTH0.0850.0040.089
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.1000.0120.112
danRer6.geneSymbol.LENGTH0.0560.0080.064
danRer6.refGene.LENGTH0.0410.0200.060
danRer6.xenoRefGene.LENGTH0.7180.0000.718
dm1.geneSymbol.LENGTH0.0530.0280.082
dm1.genscan.LENGTH0.0120.0160.031
dm1.refGene.LENGTH0.0610.0120.077
dm2.geneSymbol.LENGTH0.0710.0120.082
dm2.geneid.LENGTH0.0280.0200.048
dm2.genscan.LENGTH0.0230.0080.031
dm2.nscanGene.LENGTH0.0430.0000.044
dm2.refGene.LENGTH0.0620.0160.079
dm3.geneSymbol.LENGTH0.0950.0000.095
dm3.nscanPasaGene.LENGTH0.0570.0080.066
dm3.refGene.LENGTH0.0560.0000.056
dp2.genscan.LENGTH0.0250.0120.037
dp2.xenoRefGene.LENGTH0.2060.0040.210
dp3.geneid.LENGTH0.0450.0080.054
dp3.genscan.LENGTH0.0220.0120.034
dp3.xenoRefGene.LENGTH0.0990.0120.111
droAna1.geneid.LENGTH0.0610.0040.065
droAna1.genscan.LENGTH0.0210.0000.022
droAna1.xenoRefGene.LENGTH0.1800.0040.183
droAna2.genscan.LENGTH0.0380.0040.043
droAna2.xenoRefGene.LENGTH0.2290.0160.246
droEre1.genscan.LENGTH0.0210.0160.036
droEre1.xenoRefGene.LENGTH0.5150.0040.519
droGri1.genscan.LENGTH0.0350.0120.048
droGri1.xenoRefGene.LENGTH0.2140.0000.215
droMoj1.geneid.LENGTH0.1110.0040.115
droMoj1.genscan.LENGTH0.0820.0000.082
droMoj1.xenoRefGene.LENGTH0.1930.0040.197
droMoj2.genscan.LENGTH0.0390.0080.047
droMoj2.xenoRefGene.LENGTH0.2520.0080.260
droPer1.genscan.LENGTH0.0430.0080.052
droPer1.xenoRefGene.LENGTH0.2080.0080.216
droSec1.genscan.LENGTH0.0480.0110.060
droSec1.xenoRefGene.LENGTH0.2130.0010.213
droSim1.geneid.LENGTH0.0470.0080.055
droSim1.genscan.LENGTH0.0600.0040.065
droSim1.xenoRefGene.LENGTH0.2090.0000.210
droVir1.geneid.LENGTH0.1080.0040.113
droVir1.genscan.LENGTH0.0790.0160.095
droVir1.xenoRefGene.LENGTH0.1930.0040.198
droVir2.genscan.LENGTH0.0840.0000.084
droVir2.xenoRefGene.LENGTH0.2410.0000.242
droYak1.geneid.LENGTH0.4910.0230.516
droYak1.genscan.LENGTH0.0480.0120.060
droYak1.xenoRefGene.LENGTH0.2080.0000.208
droYak2.genscan.LENGTH0.0380.0000.038
droYak2.xenoRefGene.LENGTH0.2630.0040.267
equCab1.geneSymbol.LENGTH0.0060.0000.009
equCab1.geneid.LENGTH0.1200.0120.133
equCab1.nscanGene.LENGTH0.0680.0160.084
equCab1.refGene.LENGTH0.0090.0000.010
equCab1.sgpGene.LENGTH0.1220.0120.134
equCab2.ensGene.LENGTH0.1380.0040.141
equCab2.geneSymbol.LENGTH0.0090.0040.013
equCab2.nscanGene.LENGTH0.0690.0400.110
equCab2.refGene.LENGTH0.010.000.01
equCab2.xenoRefGene.LENGTH0.5870.0000.588
felCat3.ensGene.LENGTH0.5070.0000.509
felCat3.geneSymbol.LENGTH0.0020.0040.007
felCat3.geneid.LENGTH1.0480.0041.062
felCat3.genscan.LENGTH0.1560.0080.161
felCat3.nscanGene.LENGTH0.4940.0160.512
felCat3.refGene.LENGTH0.0040.0000.005
felCat3.sgpGene.LENGTH0.1130.0000.114
felCat3.xenoRefGene.LENGTH0.9670.0160.985
fr1.ensGene.LENGTH0.1260.0040.129
fr1.genscan.LENGTH0.0520.0000.053
fr2.ensGene.LENGTH0.1400.0080.149
galGal2.ensGene.LENGTH0.0470.0000.047
galGal2.geneSymbol.LENGTH0.0210.0000.022
galGal2.geneid.LENGTH0.0480.0040.052
galGal2.genscan.LENGTH0.0520.0160.069
galGal2.refGene.LENGTH0.0190.0040.020
galGal2.sgpGene.LENGTH0.0450.0160.063
galGal3.ensGene.LENGTH0.0600.0080.067
galGal3.geneSymbol.LENGTH0.0080.0120.020
galGal3.genscan.LENGTH0.0970.0160.110
galGal3.nscanGene.LENGTH0.0610.0000.063
galGal3.refGene.LENGTH0.0110.0080.019
galGal3.xenoRefGene.LENGTH0.5490.0000.550
gasAcu1.ensGene.LENGTH0.1210.0080.129
gasAcu1.nscanGene.LENGTH0.0890.0160.105
hg16.acembly.LENGTH0.6410.0000.641
hg16.ensGene.LENGTH0.0630.0040.067
hg16.exoniphy.LENGTH0.1980.0000.199
hg16.geneSymbol.LENGTH0.0890.0040.093
hg16.geneid.LENGTH0.0530.0120.066
hg16.genscan.LENGTH0.0560.0080.064
hg16.knownGene.LENGTH0.1820.0080.193
hg16.refGene.LENGTH0.0800.0040.084
hg16.sgpGene.LENGTH0.0530.0000.054
hg17.acembly.LENGTH0.60.00.6
hg17.acescan.LENGTH0.0040.0080.013
hg17.ccdsGene.LENGTH0.0260.0040.030
hg17.ensGene.LENGTH0.1070.0040.111
hg17.exoniphy.LENGTH0.4050.0000.406
hg17.geneSymbol.LENGTH0.0890.0040.092
hg17.geneid.LENGTH0.1410.0000.142
hg17.genscan.LENGTH0.4610.0040.465
hg17.knownGene.LENGTH0.0820.0120.094
hg17.refGene.LENGTH0.0770.0040.081
hg17.sgpGene.LENGTH0.0990.0160.116
hg17.vegaGene.LENGTH0.0520.0200.073
hg17.vegaPseudoGene.LENGTH0.0270.0040.031
hg17.xenoRefGene.LENGTH0.2220.0000.222
hg18.acembly.LENGTH0.6740.0000.674
hg18.acescan.LENGTH0.0080.0040.012
hg18.ccdsGene.LENGTH0.0320.0080.039
hg18.ensGene.LENGTH0.1470.0040.152
hg18.exoniphy.LENGTH0.3540.0000.355
hg18.geneSymbol.LENGTH0.0890.0000.089
hg18.geneid.LENGTH0.0700.0040.075
hg18.genscan.LENGTH0.0480.0120.060
hg18.knownGene.LENGTH0.1380.0000.138
hg18.knownGeneOld3.LENGTH0.0690.0040.072
hg18.refGene.LENGTH0.0850.0000.085
hg18.sgpGene.LENGTH0.1660.0000.166
hg18.sibGene.LENGTH0.2930.0040.294
hg18.xenoRefGene.LENGTH0.3120.0160.330
hg19.ccdsGene.LENGTH0.0460.0240.070
hg19.ensGene.LENGTH0.4660.0120.478
hg19.exoniphy.LENGTH0.7910.0080.798
hg19.geneSymbol.LENGTH0.1240.0000.125
hg19.knownGene.LENGTH0.1520.0080.160
hg19.nscanGene.LENGTH0.1250.0000.126
hg19.refGene.LENGTH0.0840.0080.091
hg19.xenoRefGene.LENGTH0.3020.0000.302
loxAfr3.xenoRefGene.LENGTH0.5900.0000.591
mm7.ensGene.LENGTH0.0940.0000.094
mm7.geneSymbol.LENGTH0.0750.0000.075
mm7.geneid.LENGTH0.0770.0080.085
mm7.genscan.LENGTH0.1660.0000.166
mm7.knownGene.LENGTH0.080.000.08
mm7.refGene.LENGTH0.0720.0000.073
mm7.sgpGene.LENGTH0.0710.0080.078
mm7.xenoRefGene.LENGTH0.2430.0000.244
mm8.ccdsGene.LENGTH0.0200.0080.028
mm8.ensGene.LENGTH0.0730.0040.078
mm8.geneSymbol.LENGTH0.0740.0000.075
mm8.geneid.LENGTH0.0710.0080.079
mm8.genscan.LENGTH0.0580.0000.057
mm8.knownGene.LENGTH0.080.000.08
mm8.nscanGene.LENGTH0.0590.0000.059
mm8.refGene.LENGTH0.0710.0000.072
mm8.sgpGene.LENGTH0.0730.0040.077
mm8.sibGene.LENGTH0.3010.0000.301
mm8.xenoRefGene.LENGTH0.2830.0120.295
mm9.acembly.LENGTH0.3560.0080.364
mm9.ccdsGene.LENGTH0.0340.0040.038
mm9.ensGene.LENGTH0.3760.0040.381
mm9.exoniphy.LENGTH0.3740.0000.373
mm9.geneSymbol.LENGTH0.0760.0000.077
mm9.geneid.LENGTH0.0880.0040.092
mm9.genscan.LENGTH0.0580.0040.062
mm9.knownGene.LENGTH0.1070.0080.115
mm9.nscanGene.LENGTH0.1550.0000.156
mm9.refGene.LENGTH0.0730.0000.073
mm9.sgpGene.LENGTH0.0830.0040.087
mm9.xenoRefGene.LENGTH0.3050.0040.310
monDom1.genscan.LENGTH0.0610.0040.065
monDom4.ensGene.LENGTH0.2190.0040.223
monDom4.geneSymbol.LENGTH0.0050.0000.004
monDom4.genscan.LENGTH0.0600.0120.072
monDom4.nscanGene.LENGTH0.0590.0160.075
monDom4.refGene.LENGTH0.0040.0000.004
monDom4.xenoRefGene.LENGTH0.290.000.29
monDom5.ensGene.LENGTH0.5670.0000.567
monDom5.geneSymbol.LENGTH0.0040.0000.004
monDom5.genscan.LENGTH0.0450.0000.045
monDom5.nscanGene.LENGTH0.0910.0000.092
monDom5.refGene.LENGTH0.0040.0000.004
monDom5.xenoRefGene.LENGTH0.4780.0000.478
ornAna1.ensGene.LENGTH0.0830.0160.100
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0030.0000.003
ornAna1.xenoRefGene.LENGTH0.4430.0040.446
oryLat2.ensGene.LENGTH0.0700.0040.075
oryLat2.geneSymbol.LENGTH0.0050.0000.004
oryLat2.refGene.LENGTH0.0040.0000.004
oryLat2.xenoRefGene.LENGTH0.3710.0000.375
panTro1.ensGene.LENGTH0.0840.0080.092
panTro1.geneid.LENGTH0.0470.0160.063
panTro1.genscan.LENGTH0.0540.0000.054
panTro1.xenoRefGene.LENGTH0.1960.0040.200
panTro2.ensGene.LENGTH0.0930.0080.099
panTro2.geneSymbol.LENGTH0.0830.0080.092
panTro2.genscan.LENGTH0.0510.0040.055
panTro2.nscanGene.LENGTH0.0570.0000.056
panTro2.refGene.LENGTH0.1170.0080.124
panTro2.xenoRefGene.LENGTH0.4570.0000.457
petMar1.xenoRefGene.LENGTH0.2490.0160.266
ponAbe2.ensGene.LENGTH0.1240.0080.132
ponAbe2.geneSymbol.LENGTH0.0160.0000.016
ponAbe2.genscan.LENGTH0.0520.0040.056
ponAbe2.nscanGene.LENGTH0.0540.0000.054
ponAbe2.refGene.LENGTH0.0110.0040.015
ponAbe2.xenoRefGene.LENGTH0.6950.0120.709
priPac1.xenoRefGene.LENGTH0.3050.0000.304
rheMac2.ensGene.LENGTH0.1180.0000.117
rheMac2.geneSymbol.LENGTH0.0070.0000.007
rheMac2.geneid.LENGTH0.0570.0120.070
rheMac2.nscanGene.LENGTH0.0550.0000.055
rheMac2.refGene.LENGTH0.0060.0000.006
rheMac2.sgpGene.LENGTH0.0930.0080.101
rheMac2.xenoRefGene.LENGTH0.5060.0000.507
rn3.ensGene.LENGTH0.1220.0200.141
rn3.geneSymbol.LENGTH0.0770.0200.096
rn3.geneid.LENGTH0.3030.0040.307
rn3.genscan.LENGTH0.0910.0040.095
rn3.knownGene.LENGTH0.0270.0200.047
rn3.nscanGene.LENGTH0.080.000.08
rn3.refGene.LENGTH0.0720.0240.096
rn3.sgpGene.LENGTH0.0740.0080.083
rn3.xenoRefGene.LENGTH0.6270.0000.627
rn4.ensGene.LENGTH0.1570.0000.158
rn4.geneSymbol.LENGTH0.0700.0240.098
rn4.geneid.LENGTH0.1260.0160.142
rn4.genscan.LENGTH0.0860.0080.094
rn4.knownGene.LENGTH0.0420.0080.050
rn4.nscanGene.LENGTH0.0710.0480.119
rn4.refGene.LENGTH0.0910.0040.095
rn4.sgpGene.LENGTH0.1120.0200.136
rn4.xenoRefGene.LENGTH0.4660.0000.467
sacCer1.ensGene.LENGTH0.0330.0080.041
sacCer2.ensGene.LENGTH0.0320.0080.040
strPur1.geneSymbol.LENGTH0.0090.0000.009
strPur1.genscan.LENGTH0.0850.0000.085
strPur1.refGene.LENGTH0.0090.0000.009
strPur1.xenoRefGene.LENGTH0.5160.0000.516
strPur2.geneSymbol.LENGTH0.0080.0000.008
strPur2.genscan.LENGTH0.1710.0000.171
strPur2.refGene.LENGTH0.0070.0000.007
strPur2.xenoRefGene.LENGTH0.7210.0000.721
supportedGeneIDs0.0160.0000.016
supportedGenomes0.1010.0040.680
taeGut1.ensGene.LENGTH0.2470.0080.256
taeGut1.geneSymbol.LENGTH0.0050.0000.005
taeGut1.genscan.LENGTH0.0500.0160.068
taeGut1.nscanGene.LENGTH0.0370.0200.058
taeGut1.refGene.LENGTH0.0050.0000.005
taeGut1.xenoRefGene.LENGTH0.5350.0040.545
tetNig1.ensGene.LENGTH0.1200.0200.142
tetNig1.geneid.LENGTH0.0930.0120.106
tetNig1.genscan.LENGTH0.0760.0240.101
tetNig1.nscanGene.LENGTH0.1050.0080.112
tetNig2.ensGene.LENGTH0.2060.0040.211
unfactor0.0050.0000.005
xenTro1.genscan.LENGTH0.0840.0000.084
xenTro2.ensGene.LENGTH0.0840.0160.100
xenTro2.geneSymbol.LENGTH0.0430.0000.043
xenTro2.genscan.LENGTH0.0700.0120.083
xenTro2.refGene.LENGTH0.0420.0000.042