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BioC experimental data: CHECK report for curatedOvarianData on moscato1

This page was generated on 2016-04-20 20:26:37 -0700 (Wed, 20 Apr 2016).

Package 58/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
curatedOvarianData 1.8.0
Levi Waldron
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/curatedOvarianData
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: curatedOvarianData
Version: 1.8.0
Command: rm -rf curatedOvarianData.buildbin-libdir curatedOvarianData.Rcheck && mkdir curatedOvarianData.buildbin-libdir curatedOvarianData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=curatedOvarianData.buildbin-libdir curatedOvarianData_1.8.0.tar.gz >curatedOvarianData.Rcheck\00install.out 2>&1 && cp curatedOvarianData.Rcheck\00install.out curatedOvarianData-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=curatedOvarianData.buildbin-libdir --install="check:curatedOvarianData-install.out" --force-multiarch --no-vignettes --timings curatedOvarianData_1.8.0.tar.gz
StartedAt: 2016-04-20 13:05:03 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 13:21:34 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 990.4 seconds
RetCode: 0
Status:  OK  
CheckDir: curatedOvarianData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf curatedOvarianData.buildbin-libdir curatedOvarianData.Rcheck && mkdir curatedOvarianData.buildbin-libdir curatedOvarianData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=curatedOvarianData.buildbin-libdir curatedOvarianData_1.8.0.tar.gz >curatedOvarianData.Rcheck\00install.out 2>&1 && cp curatedOvarianData.Rcheck\00install.out curatedOvarianData-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=curatedOvarianData.buildbin-libdir --install="check:curatedOvarianData-install.out" --force-multiarch --no-vignettes --timings curatedOvarianData_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/curatedOvarianData.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'curatedOvarianData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'curatedOvarianData' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'curatedOvarianData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 380.9Mb
  sub-directories of 1Mb or more:
    data  380.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [112s]
 [114s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [121s]
 [121s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/curatedOvarianData.Rcheck/00check.log'
for details.


curatedOvarianData.Rcheck/00install.out:


install for i386

* installing *source* package 'curatedOvarianData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'curatedOvarianData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'curatedOvarianData' as curatedOvarianData_1.8.0.zip
* DONE (curatedOvarianData)

curatedOvarianData.Rcheck/examples_i386/curatedOvarianData-Ex.timings:

nameusersystemelapsed
curatedOvarianData-package0.030.002.25

curatedOvarianData.Rcheck/examples_x64/curatedOvarianData-Ex.timings:

nameusersystemelapsed
curatedOvarianData-package0.040.001.88