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BioC experimental data: CHECK report for MAQCsubset on moscato1

This page was generated on 2016-04-20 20:26:21 -0700 (Wed, 20 Apr 2016).

Package 152/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAQCsubset 1.8.0
VJ Carey
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/MAQCsubset
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: MAQCsubset
Version: 1.8.0
Command: rm -rf MAQCsubset.buildbin-libdir MAQCsubset.Rcheck && mkdir MAQCsubset.buildbin-libdir MAQCsubset.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MAQCsubset.buildbin-libdir MAQCsubset_1.8.0.tar.gz >MAQCsubset.Rcheck\00install.out 2>&1 && cp MAQCsubset.Rcheck\00install.out MAQCsubset-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MAQCsubset.buildbin-libdir --install="check:MAQCsubset-install.out" --force-multiarch --no-vignettes --timings MAQCsubset_1.8.0.tar.gz
StartedAt: 2016-04-20 14:41:01 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 14:50:33 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 571.9 seconds
RetCode: 0
Status:  OK  
CheckDir: MAQCsubset.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf MAQCsubset.buildbin-libdir MAQCsubset.Rcheck && mkdir MAQCsubset.buildbin-libdir MAQCsubset.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MAQCsubset.buildbin-libdir MAQCsubset_1.8.0.tar.gz >MAQCsubset.Rcheck\00install.out 2>&1 && cp MAQCsubset.Rcheck\00install.out MAQCsubset-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=MAQCsubset.buildbin-libdir --install="check:MAQCsubset-install.out" --force-multiarch --no-vignettes --timings MAQCsubset_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 64.4Mb
  sub-directories of 1Mb or more:
    data  64.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'genefilter' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'Biobase' 'affy' 'lumi' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
proboscis: no visible global function definition for 'rowttests'
proboscis: no visible global function definition for 'exprs'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [33s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
proboStruct-class 2.22   0.05    11.5
** running examples for arch 'x64' ... [19s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/MAQCsubset.Rcheck/00check.log'
for details.


MAQCsubset.Rcheck/00install.out:


install for i386

* installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'lines' from package 'graphics' in package 'MAQCsubset'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MAQCsubset' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAQCsubset' as MAQCsubset_1.8.0.zip
* DONE (MAQCsubset)

MAQCsubset.Rcheck/examples_i386/MAQCsubset-Ex.timings:

nameusersystemelapsed
MAQCsubset1.640.001.64
gehMAQCsubDef0.460.010.47
gnfCerebHi0.010.000.01
proboStruct-class 2.22 0.0511.50
proboscis1.710.001.86

MAQCsubset.Rcheck/examples_x64/MAQCsubset-Ex.timings:

nameusersystemelapsed
MAQCsubset1.460.021.48
gehMAQCsubDef0.390.020.41
gnfCerebHi0.020.000.02
proboStruct-class2.340.032.66
proboscis1.900.031.94