BioC experimental data: CHECK report for GSBenchMark on moscato1

Package: GSBenchMark

Version: 0.104.0

Command: rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.104.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.104.0.tar.gz

StartedAt: 2016-04-20 14:04:03 -0700 (Wed, 20 Apr 2016)

EndedAt: 2016-04-20 14:05:26 -0700 (Wed, 20 Apr 2016)

EllapsedTime: 82.9 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.104.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.104.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSBenchMark/DESCRIPTION' ... OK
* this is package 'GSBenchMark' version '0.104.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSBenchMark' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [8s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GSBenchMark' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSBenchMark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSBenchMark' as GSBenchMark_0.104.0.zip
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.34	0.01	0.38
bipolar_GDS2190	0.31	0.02	0.33
breast_GDS807	0.39	0.03	0.42
diracpathways	0.00	0.03	0.03
exprsdata	0.57	0.03	0.59
leukemia_GSEA	0.36	0.00	0.36
logexprsdata	0.71	0.03	0.75
marfan_GDS2960	0.28	0.00	0.28
melanoma_GDS2735	0.69	0.02	0.70
parkinsons_GDS2519	0.78	0.04	0.83
phenotypes	0.59	0.02	0.65
prostate_GDS2545_m_nf	0.38	0.01	0.39
prostate_GDS2545_m_p	0.51	0.02	0.53
prostate_GDS2545_p_nf	0.44	0.02	0.46
sarcoma_data	0.87	0.03	0.90
squamous_GDS2520	0.33	0.00	0.33

name	user	system	elapsed
GSBenchMarkDatasets	0.36	0.00	0.36
bipolar_GDS2190	0.30	0.00	0.29
breast_GDS807	0.29	0.03	0.33
diracpathways	0.02	0.02	0.03
exprsdata	0.39	0.03	0.42
leukemia_GSEA	0.28	0.00	0.28
logexprsdata	0.45	0.00	0.45
marfan_GDS2960	0.14	0.01	0.16
melanoma_GDS2735	0.40	0.02	0.42
parkinsons_GDS2519	0.64	0.08	0.72
phenotypes	0.46	0.01	0.47
prostate_GDS2545_m_nf	0.23	0.00	0.23
prostate_GDS2545_m_p	0.45	0.00	0.45
prostate_GDS2545_p_nf	0.39	0.02	0.42
sarcoma_data	0.72	0.01	0.73
squamous_GDS2520	0.27	0.00	0.27