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BioC experimental data: CHECK report for EatonEtAlChIPseq on moscato1

This page was generated on 2016-04-20 20:26:28 -0700 (Wed, 20 Apr 2016).

Package 73/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EatonEtAlChIPseq 0.8.0
Patrick Aboyoun
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/EatonEtAlChIPseq
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: EatonEtAlChIPseq
Version: 0.8.0
Command: rm -rf EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq.Rcheck && mkdir EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq_0.8.0.tar.gz >EatonEtAlChIPseq.Rcheck\00install.out 2>&1 && cp EatonEtAlChIPseq.Rcheck\00install.out EatonEtAlChIPseq-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EatonEtAlChIPseq.buildbin-libdir --install="check:EatonEtAlChIPseq-install.out" --force-multiarch --no-vignettes --timings EatonEtAlChIPseq_0.8.0.tar.gz
StartedAt: 2016-04-20 13:25:54 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 13:37:10 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 676.4 seconds
RetCode: 0
Status:  OK  
CheckDir: EatonEtAlChIPseq.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq.Rcheck && mkdir EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq_0.8.0.tar.gz >EatonEtAlChIPseq.Rcheck\00install.out 2>&1 && cp EatonEtAlChIPseq.Rcheck\00install.out EatonEtAlChIPseq-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EatonEtAlChIPseq.buildbin-libdir --install="check:EatonEtAlChIPseq-install.out" --force-multiarch --no-vignettes --timings EatonEtAlChIPseq_0.8.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/EatonEtAlChIPseq.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EatonEtAlChIPseq/DESCRIPTION' ... OK
* this is package 'EatonEtAlChIPseq' version '0.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EatonEtAlChIPseq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.6Mb
  sub-directories of 1Mb or more:
    extdata  20.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [43s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
orcAligns 17.75   0.68   21.86
orcPeaks   0.17   0.00   13.91
** running examples for arch 'x64' ... [38s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
orcAligns 18.17   0.82      19
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/EatonEtAlChIPseq.Rcheck/00check.log'
for details.


EatonEtAlChIPseq.Rcheck/00install.out:


install for i386

* installing *source* package 'EatonEtAlChIPseq' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'EatonEtAlChIPseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EatonEtAlChIPseq' as EatonEtAlChIPseq_0.8.0.zip
* DONE (EatonEtAlChIPseq)

EatonEtAlChIPseq.Rcheck/examples_i386/EatonEtAlChIPseq-Ex.timings:

nameusersystemelapsed
orcAligns17.75 0.6821.86
orcPeaks 0.17 0.0013.91

EatonEtAlChIPseq.Rcheck/examples_x64/EatonEtAlChIPseq-Ex.timings:

nameusersystemelapsed
orcAligns18.17 0.8219.00
orcPeaks0.120.000.12