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BioC experimental data: CHECK report for DvDdata on moscato1

This page was generated on 2016-04-20 20:26:38 -0700 (Wed, 20 Apr 2016).

Package 71/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DvDdata 1.6.0
J. Saez-Rodriguez
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/DvDdata
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: DvDdata
Version: 1.6.0
Command: rm -rf DvDdata.buildbin-libdir DvDdata.Rcheck && mkdir DvDdata.buildbin-libdir DvDdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DvDdata.buildbin-libdir DvDdata_1.6.0.tar.gz >DvDdata.Rcheck\00install.out 2>&1 && cp DvDdata.Rcheck\00install.out DvDdata-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DvDdata.buildbin-libdir --install="check:DvDdata-install.out" --force-multiarch --no-vignettes --timings DvDdata_1.6.0.tar.gz
StartedAt: 2016-04-20 13:24:37 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 13:32:23 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 465.8 seconds
RetCode: 0
Status:  OK  
CheckDir: DvDdata.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf DvDdata.buildbin-libdir DvDdata.Rcheck && mkdir DvDdata.buildbin-libdir DvDdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DvDdata.buildbin-libdir DvDdata_1.6.0.tar.gz >DvDdata.Rcheck\00install.out 2>&1 && cp DvDdata.Rcheck\00install.out DvDdata-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=DvDdata.buildbin-libdir --install="check:DvDdata-install.out" --force-multiarch --no-vignettes --timings DvDdata_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/DvDdata.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DvDdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DvDdata' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DvDdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.1Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/DvDdata.Rcheck/00check.log'
for details.


DvDdata.Rcheck/00install.out:


install for i386

* installing *source* package 'DvDdata' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DvDdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DvDdata' as DvDdata_1.6.0.zip
* DONE (DvDdata)

DvDdata.Rcheck/examples_i386/DvDdata-Ex.timings:

nameusersystemelapsed
DvDdata-package0.030.000.03
GEOfactorvalues000
annotationlist0.020.000.02
cytodisease000
cytodrug000
diseaseClusters000
diseaseRL0.000.020.02
diseaselabels000
drugClusters0.010.000.01
drugRL000
druglabels000
genelist000

DvDdata.Rcheck/examples_x64/DvDdata-Ex.timings:

nameusersystemelapsed
DvDdata-package0.030.000.03
GEOfactorvalues000
annotationlist0.010.000.02
cytodisease000
cytodrug000
diseaseClusters000
diseaseRL000
diseaselabels0.020.000.02
drugClusters000
drugRL0.000.020.01
druglabels000
genelist000