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BioC experimental data: CHECK report for synapterdata on moscato1

This page was generated on 2015-08-22 17:44:17 -0700 (Sat, 22 Aug 2015).

Package 227/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
synapterdata 1.7.0
Laurent Gatto
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/synapterdata
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 

Summary

Package: synapterdata
Version: 1.7.0
Command: rm -rf synapterdata.buildbin-libdir synapterdata.Rcheck && mkdir synapterdata.buildbin-libdir synapterdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=synapterdata.buildbin-libdir synapterdata_1.7.0.tar.gz >synapterdata.Rcheck\00install.out 2>&1 && cp synapterdata.Rcheck\00install.out synapterdata-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=synapterdata.buildbin-libdir --install="check:synapterdata-install.out" --force-multiarch --no-vignettes --timings synapterdata_1.7.0.tar.gz
StartedAt: 2015-08-22 13:42:55 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 13:58:19 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 923.9 seconds
RetCode: 0
Status:  OK  
CheckDir: synapterdata.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf synapterdata.buildbin-libdir synapterdata.Rcheck && mkdir synapterdata.buildbin-libdir synapterdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=synapterdata.buildbin-libdir synapterdata_1.7.0.tar.gz >synapterdata.Rcheck\00install.out 2>&1 && cp synapterdata.Rcheck\00install.out synapterdata-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=synapterdata.buildbin-libdir --install="check:synapterdata-install.out" --force-multiarch --no-vignettes --timings synapterdata_1.7.0.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/synapterdata.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'synapterdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'synapterdata' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'synapterdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 429.3Mb
  sub-directories of 1Mb or more:
    data      38.6Mb
    extdata  390.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
** running examples for arch 'x64' ... [13s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/synapterdata.Rcheck/00check.log'
for details.


synapterdata.Rcheck/00install.out:


install for i386

* installing *source* package 'synapterdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'synapterdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synapterdata' as synapterdata_1.7.0.zip
* DONE (synapterdata)

synapterdata.Rcheck/examples_i386/synapterdata-Ex.timings:

nameusersystemelapsed
getHDMSeFinalPeptide000
getMasterRds0.170.020.19
synobj23.540.063.60
ups25a1.380.001.38

synapterdata.Rcheck/examples_x64/synapterdata-Ex.timings:

nameusersystemelapsed
getHDMSeFinalPeptide000
getMasterRds0.220.000.22
synobj23.580.033.62
ups25a1.520.051.56