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BioC experimental data: CHECK report for pRolocdata on moscato1

This page was generated on 2015-08-22 17:44:19 -0700 (Sat, 22 Aug 2015).

Package 188/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRolocdata 1.7.2
Laurent Gatto
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata
Last Changed Rev: 3350 / Revision: 3391
Last Changed Date: 2015-07-17 14:58:58 -0700 (Fri, 17 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 

Summary

Package: pRolocdata
Version: 1.7.2
Command: rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.7.2.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.7.2.tar.gz
StartedAt: 2015-08-22 13:15:16 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 13:20:56 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 339.8 seconds
RetCode: 0
Status:  OK  
CheckDir: pRolocdata.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf pRolocdata.buildbin-libdir pRolocdata.Rcheck && mkdir pRolocdata.buildbin-libdir pRolocdata.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pRolocdata.buildbin-libdir pRolocdata_1.7.2.tar.gz >pRolocdata.Rcheck\00install.out 2>&1 && cp pRolocdata.Rcheck\00install.out pRolocdata-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=pRolocdata.buildbin-libdir --install="check:pRolocdata-install.out" --force-multiarch --no-vignettes --timings pRolocdata_1.7.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pRolocdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pRolocdata' version '1.7.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pRolocdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 21.0Mb
  sub-directories of 1Mb or more:
    data      6.7Mb
    extdata  14.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [31s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
fabre2015 6.77   0.23   13.66
groen2014 5.18   0.00    5.18
** running examples for arch 'x64' ... [29s] OK
Examples with CPU or elapsed time > 5s
          user system elapsed
groen2014 7.75   0.05    7.80
fabre2015 7.21   0.26    9.47
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck/00check.log'
for details.


pRolocdata.Rcheck/00install.out:


install for i386

* installing *source* package 'pRolocdata' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'pRolocdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pRolocdata' as pRolocdata_1.7.2.zip
* DONE (pRolocdata)

pRolocdata.Rcheck/examples_i386/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.060.020.08
andy20110.330.000.33
at_chloro0.180.000.19
dunkley20060.030.000.03
fabre2015 6.77 0.2313.66
foster20060.030.030.06
groen20145.180.005.18
hall20090.470.000.47
havugimana20120.540.020.56
kirkwood20130.050.020.06
kristensen20120.050.000.05
nikolovski20121.030.061.09
nikolovski20140.630.010.64
pRolocdata0.010.000.01
pRolocmetadata0.030.020.05
tan20090.040.000.03
trotter20100.490.000.50

pRolocdata.Rcheck/examples_x64/pRolocdata-Ex.timings:

nameusersystemelapsed
E14TG2a0.050.000.04
andy20110.070.000.08
at_chloro0.390.000.39
dunkley20060.030.000.03
fabre20157.210.269.47
foster20060.060.000.06
groen20147.750.057.80
hall20090.300.020.31
havugimana20120.720.030.75
kirkwood20130.080.000.07
kristensen20120.050.000.05
nikolovski20121.200.041.25
nikolovski20140.600.040.63
pRolocdata0.020.000.02
pRolocmetadata0.000.010.02
tan20090.030.000.03
trotter20100.400.020.42