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BioC experimental data: CHECK report for kidpack on moscato1

This page was generated on 2015-08-22 17:44:02 -0700 (Sat, 22 Aug 2015).

Package 140/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
kidpack 1.11.0
Wolfgang Huber
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/kidpack
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: kidpack
Version: 1.11.0
Command: rm -rf kidpack.buildbin-libdir kidpack.Rcheck && mkdir kidpack.buildbin-libdir kidpack.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=kidpack.buildbin-libdir kidpack_1.11.0.tar.gz >kidpack.Rcheck\00install.out 2>&1 && cp kidpack.Rcheck\00install.out kidpack-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=kidpack.buildbin-libdir --install="check:kidpack-install.out" --force-multiarch --no-vignettes --timings kidpack_1.11.0.tar.gz
StartedAt: 2015-08-22 12:30:51 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 12:33:57 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 186.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: kidpack.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf kidpack.buildbin-libdir kidpack.Rcheck && mkdir kidpack.buildbin-libdir kidpack.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=kidpack.buildbin-libdir kidpack_1.11.0.tar.gz >kidpack.Rcheck\00install.out 2>&1 && cp kidpack.Rcheck\00install.out kidpack-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=kidpack.buildbin-libdir --install="check:kidpack-install.out" --force-multiarch --no-vignettes --timings kidpack_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/kidpack.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'kidpack/DESCRIPTION' ... OK
* this is package 'kidpack' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'kidpack' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.2Mb
  sub-directories of 1Mb or more:
    data  19.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'kidpack/R/zzz.R':
  .onLoad calls:
    message(sprintf("\n*** Deprecation warning ***:\nThe package '%s' is deprecated and will not be supported after Bioconductor release 2.1.\n\n",     pkgname))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data files saved inefficiently:
                 size ASCII compress
  cloneanno.rda 742Kb FALSE     none
  spotanno.rda  1.4Mb FALSE     none
  Warning: package needs dependence on R (>= 2.10)
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/kidpack.Rcheck/00check.log'
for details.


kidpack.Rcheck/00install.out:


install for i386

* installing *source* package 'kidpack' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.



install for x64

* installing *source* package 'kidpack' ...
** testing if installed package can be loaded

*** Deprecation warning ***:
The package 'kidpack' is deprecated and will not be supported after Bioconductor release 2.1.


* MD5 sums
packaged installation of 'kidpack' as kidpack_1.11.0.zip
* DONE (kidpack)

kidpack.Rcheck/examples_i386/kidpack-Ex.timings:

nameusersystemelapsed
eset0.390.080.47
qua1.680.141.82

kidpack.Rcheck/examples_x64/kidpack-Ex.timings:

nameusersystemelapsed
eset0.500.020.51
qua2.000.052.04