hmyriB36 1.5.0
Vincent Carey
| Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hmyriB36 | | Last Changed Rev: 3281 / Revision: 3391 | | Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf hmyriB36.buildbin-libdir hmyriB36.Rcheck && mkdir hmyriB36.buildbin-libdir hmyriB36.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hmyriB36.buildbin-libdir hmyriB36_1.5.0.tar.gz >hmyriB36.Rcheck\00install.out 2>&1 && cp hmyriB36.Rcheck\00install.out hmyriB36-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=hmyriB36.buildbin-libdir --install="check:hmyriB36-install.out" --force-multiarch --no-vignettes --timings hmyriB36_1.5.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/hmyriB36.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hmyriB36/DESCRIPTION' ... OK
* this is package 'hmyriB36' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hmyriB36' can be installed ... OK
* checking installed package size ... NOTE
installed size is 79.8Mb
sub-directories of 1Mb or more:
data 21.1Mb
parts 58.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'GGBase' 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'hmyriB36/R/zzz.R':
.onLoad calls:
packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"", pkgname, "\", [chrvec])", sep = ""))
packageStartupMessage(paste("available chromosomes are named ", paste(selectSome(cn), collapse = ", ")))
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [28s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
hmyriB36-pkg 17.75 0.52 18.26
** running examples for arch 'x64' ... [36s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
hmyriB36-pkg 16.98 0.56 22.82
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/hmyriB36.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'hmyriB36' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
install for x64
* installing *source* package 'hmyriB36' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
* MD5 sums
packaged installation of 'hmyriB36' as hmyriB36_1.5.0.zip
* DONE (hmyriB36)