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BioC experimental data: CHECK report for facsDorit on moscato1

This page was generated on 2015-08-22 17:44:00 -0700 (Sat, 22 Aug 2015).

Package 81/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
facsDorit 1.11.0
Florian Hahne
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/facsDorit
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: facsDorit
Version: 1.11.0
Command: rm -rf facsDorit.buildbin-libdir facsDorit.Rcheck && mkdir facsDorit.buildbin-libdir facsDorit.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facsDorit.buildbin-libdir facsDorit_1.11.0.tar.gz >facsDorit.Rcheck\00install.out 2>&1 && cp facsDorit.Rcheck\00install.out facsDorit-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=facsDorit.buildbin-libdir --install="check:facsDorit-install.out" --force-multiarch --no-vignettes --timings facsDorit_1.11.0.tar.gz
StartedAt: 2015-08-22 11:28:50 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 11:31:35 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 165.0 seconds
RetCode: 0
Status:  OK  
CheckDir: facsDorit.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf facsDorit.buildbin-libdir facsDorit.Rcheck && mkdir facsDorit.buildbin-libdir facsDorit.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facsDorit.buildbin-libdir facsDorit_1.11.0.tar.gz >facsDorit.Rcheck\00install.out 2>&1 && cp facsDorit.Rcheck\00install.out facsDorit-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=facsDorit.buildbin-libdir --install="check:facsDorit-install.out" --force-multiarch --no-vignettes --timings facsDorit_1.11.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/facsDorit.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'facsDorit/DESCRIPTION' ... OK
* this is package 'facsDorit' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'facsDorit' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 32.5Mb
  sub-directories of 1Mb or more:
    extdata  32.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'prada'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: facsDorit.Rd:22: Dropping empty section \keyword
prepare_Rd: facsDorit.Rd:17-18: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/facsDorit.Rcheck/00check.log'
for details.


facsDorit.Rcheck/00install.out:


install for i386

* installing *source* package 'facsDorit' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'facsDorit' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'facsDorit' as facsDorit_1.11.0.zip
* DONE (facsDorit)

facsDorit.Rcheck/examples_i386/facsDorit-Ex.timings:

nameusersystemelapsed
facsDorit0.040.000.03

facsDorit.Rcheck/examples_x64/facsDorit-Ex.timings:

nameusersystemelapsed
facsDorit0.050.000.04