BioC experimental data: CHECK report for facopy.annot on moscato1

Package: facopy.annot

Version: 0.103.0

Command: rm -rf facopy.annot.buildbin-libdir facopy.annot.Rcheck && mkdir facopy.annot.buildbin-libdir facopy.annot.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facopy.annot.buildbin-libdir facopy.annot_0.103.0.tar.gz >facopy.annot.Rcheck\00install.out 2>&1 && cp facopy.annot.Rcheck\00install.out facopy.annot-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=facopy.annot.buildbin-libdir --install="check:facopy.annot-install.out" --force-multiarch --no-vignettes --timings facopy.annot_0.103.0.tar.gz

StartedAt: 2015-08-22 11:27:41 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 11:31:19 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 218.5 seconds

RetCode: 0

Status:  OK

CheckDir: facopy.annot.Rcheck

Warnings: 0

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###
### Running command:
###
###   rm -rf facopy.annot.buildbin-libdir facopy.annot.Rcheck && mkdir facopy.annot.buildbin-libdir facopy.annot.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facopy.annot.buildbin-libdir facopy.annot_0.103.0.tar.gz >facopy.annot.Rcheck\00install.out 2>&1 && cp facopy.annot.Rcheck\00install.out facopy.annot-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=facopy.annot.buildbin-libdir --install="check:facopy.annot-install.out" --force-multiarch --no-vignettes --timings facopy.annot_0.103.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'facopy.annot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'facopy.annot' version '0.103.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'facopy.annot' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [10s] OK
** running examples for arch 'x64' ... [8s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'facopy.annot' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'facopy.annot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'facopy.annot' as facopy.annot_0.103.0.zip
* DONE (facopy.annot)

name	user	system	elapsed
hg18_armLimits	0.03	0.01	0.05
hg18_db_gsk_bladder	0.02	0.02	0.03
hg18_db_gsk_blood	0.06	0.01	0.07
hg18_db_gsk_bone	0.03	0.03	0.07
hg18_db_gsk_brain	0.04	0.03	0.06
hg18_db_gsk_breast	0.07	0.02	0.09
hg18_db_gsk_cervix	0.03	0.03	0.07
hg18_db_gsk_cns	0.05	0.02	0.06
hg18_db_gsk_colon	0.05	0.01	0.06
hg18_db_gsk_connective_tissue	0.01	0.02	0.03
hg18_db_gsk_esophagus	0.05	0.01	0.06
hg18_db_gsk_eye	0.02	0.02	0.04
hg18_db_gsk_kidney	0.06	0.00	0.06
hg18_db_gsk_liver	0.05	0.03	0.08
hg18_db_gsk_lung	0.07	0.02	0.09
hg18_db_gsk_muscle	0.05	0.01	0.06
hg18_db_gsk_ovary	0.05	0.02	0.06
hg18_db_gsk_pancreas	0.04	0.03	0.08
hg18_db_gsk_pharynx	0.03	0.01	0.05
hg18_db_gsk_placenta	0.05	0.02	0.07
hg18_db_gsk_prostate	0.04	0.02	0.06
hg18_db_gsk_rectum	0.04	0.03	0.06
hg18_db_gsk_sarcoma	0.03	0.01	0.05
hg18_db_gsk_stomach	0.03	0.03	0.06
hg18_db_gsk_synovium	0.00	0.03	0.03
hg18_db_gsk_thyroid	0.03	0.02	0.05
hg18_db_gsk_uterus	0.05	0.02	0.07
hg18_db_nci60	0.08	0.01	0.09
hg18_db_tcga_blca	0.05	0.03	0.08
hg18_db_tcga_brca	0.06	0.03	0.09
hg18_db_tcga_cesc	0.06	0.02	0.08
hg18_db_tcga_coad	0.06	0.01	0.08
hg18_db_tcga_gbm	0.08	0.02	0.09
hg18_db_tcga_hnsc	0.08	0.02	0.10
hg18_db_tcga_kirc	0.08	0.01	0.09
hg18_db_tcga_kirp	0.06	0.03	0.09
hg18_db_tcga_lgg	0.06	0.02	0.08
hg18_db_tcga_lihc	0.06	0.01	0.08
hg18_db_tcga_luad	0.06	0.02	0.08
hg18_db_tcga_lusc	0.08	0.02	0.10
hg18_db_tcga_ov	0.08	0.01	0.09
hg18_db_tcga_prad	0.06	0.02	0.08
hg18_db_tcga_read	0.08	0.01	0.09
hg18_db_tcga_stad	0.06	0.02	0.08
hg18_db_tcga_thca	0.06	0.01	0.08
hg18_db_tcga_ucec	0.08	0.02	0.09
hg18_feature_cancergene	0.02	0.01	0.03
hg18_feature_ensembl	0.39	0.02	0.41
hg18_feature_lincRNA	0.11	0.02	0.12
hg18_feature_mirnas	0.01	0.01	0.03
hg18_feature_oncogene	0.03	0.02	0.05
hg18_feature_tumorsupressor	0.02	0.01	0.03
hg19_armLimits	0.01	0.02	0.03
hg19_db_gsk_bladder	0.05	0.01	0.06
hg19_db_gsk_blood	0.06	0.02	0.08
hg19_db_gsk_bone	0.05	0.01	0.07
hg19_db_gsk_brain	0.05	0.04	0.07
hg19_db_gsk_breast	0.06	0.01	0.08
hg19_db_gsk_cervix	0.06	0.02	0.08
hg19_db_gsk_cns	0.03	0.03	0.06
hg19_db_gsk_colon	0.05	0.01	0.06
hg19_db_gsk_connective_tissue	0.05	0.02	0.07
hg19_db_gsk_esophagus	0.04	0.02	0.06
hg19_db_gsk_eye	0.02	0.01	0.03
hg19_db_gsk_kidney	0.03	0.03	0.06
hg19_db_gsk_liver	0.05	0.03	0.08
hg19_db_gsk_lung	0.06	0.02	0.08
hg19_db_gsk_muscle	0.05	0.00	0.05
hg19_db_gsk_ovary	0.04	0.01	0.06
hg19_db_gsk_pancreas	0.05	0.02	0.06
hg19_db_gsk_pharynx	0.03	0.02	0.05
hg19_db_gsk_placenta	0.05	0.01	0.06
hg19_db_gsk_prostate	0.04	0.03	0.08
hg19_db_gsk_rectum	0.05	0.02	0.06
hg19_db_gsk_sarcoma	0.02	0.03	0.05
hg19_db_gsk_stomach	0.03	0.01	0.05
hg19_db_gsk_synovium	0.00	0.02	0.01
hg19_db_gsk_thyroid	0.04	0.02	0.05
hg19_db_gsk_uterus	0.03	0.01	0.05
hg19_db_nci60	0.06	0.02	0.08
hg19_db_tcga_blca	0.07	0.01	0.08
hg19_db_tcga_brca	0.07	0.01	0.09
hg19_db_tcga_cesc	0.05	0.02	0.06
hg19_db_tcga_coad	0.05	0.02	0.06
hg19_db_tcga_gbm	0.05	0.01	0.07
hg19_db_tcga_hnsc	0.07	0.02	0.09
hg19_db_tcga_kirc	0.07	0.01	0.08
hg19_db_tcga_kirp	0.08	0.02	0.10
hg19_db_tcga_lgg	0.06	0.03	0.09
hg19_db_tcga_lihc	0.08	0.01	0.09
hg19_db_tcga_luad	0.06	0.04	0.10
hg19_db_tcga_lusc	0.04	0.01	0.07
hg19_db_tcga_ov	0.07	0.03	0.09
hg19_db_tcga_prad	0.04	0.03	0.08
hg19_db_tcga_read	0.07	0.03	0.09
hg19_db_tcga_stad	0.07	0.02	0.09
hg19_db_tcga_thca	0.07	0.02	0.08
hg19_db_tcga_ucec	0.06	0.01	0.08
hg19_feature_cancergene	0.00	0.02	0.02
hg19_feature_ensembl	0.73	0.01	0.74
hg19_feature_lincRNA	0.06	0.02	0.08
hg19_feature_mirnas	0.04	0.01	0.05
hg19_feature_oncogene	0.01	0.02	0.03
hg19_feature_tumorsupressor	0.00	0.03	0.03
mm8_armLimits	0.00	0.03	0.03
mm8_feature_ensembl	0.83	0.02	0.85
mm8_feature_mirnas	0.01	0.03	0.04

name	user	system	elapsed
hg18_armLimits	0.05	0.00	0.04
hg18_db_gsk_bladder	0.04	0.01	0.07
hg18_db_gsk_blood	0.04	0.02	0.04
hg18_db_gsk_bone	0.03	0.01	0.05
hg18_db_gsk_brain	0.04	0.02	0.06
hg18_db_gsk_breast	0.05	0.03	0.08
hg18_db_gsk_cervix	0.03	0.03	0.06
hg18_db_gsk_cns	0.06	0.00	0.07
hg18_db_gsk_colon	0.05	0.03	0.07
hg18_db_gsk_connective_tissue	0.02	0.02	0.03
hg18_db_gsk_esophagus	0.04	0.01	0.07
hg18_db_gsk_eye	0.00	0.04	0.03
hg18_db_gsk_kidney	0.05	0.01	0.06
hg18_db_gsk_liver	0.04	0.02	0.06
hg18_db_gsk_lung	0.05	0.01	0.06
hg18_db_gsk_muscle	0.05	0.02	0.06
hg18_db_gsk_ovary	0.03	0.01	0.05
hg18_db_gsk_pancreas	0.04	0.02	0.06
hg18_db_gsk_pharynx	0.02	0.03	0.05
hg18_db_gsk_placenta	0.03	0.01	0.05
hg18_db_gsk_prostate	0.04	0.02	0.06
hg18_db_gsk_rectum	0.03	0.01	0.05
hg18_db_gsk_sarcoma	0.02	0.02	0.03
hg18_db_gsk_stomach	0.04	0.01	0.07
hg18_db_gsk_synovium	0.00	0.02	0.02
hg18_db_gsk_thyroid	0.04	0.02	0.06
hg18_db_gsk_uterus	0.07	0.01	0.08
hg18_db_nci60	0.06	0.02	0.08
hg18_db_tcga_blca	0.05	0.01	0.06
hg18_db_tcga_brca	0.03	0.02	0.04
hg18_db_tcga_cesc	0.08	0.01	0.10
hg18_db_tcga_coad	0.04	0.02	0.06
hg18_db_tcga_gbm	0.06	0.01	0.08
hg18_db_tcga_hnsc	0.07	0.04	0.09
hg18_db_tcga_kirc	0.07	0.01	0.10
hg18_db_tcga_kirp	0.07	0.02	0.07
hg18_db_tcga_lgg	0.08	0.00	0.08
hg18_db_tcga_lihc	0.04	0.01	0.06
hg18_db_tcga_luad	0.06	0.02	0.08
hg18_db_tcga_lusc	0.04	0.01	0.05
hg18_db_tcga_ov	0.03	0.02	0.05
hg18_db_tcga_prad	0.06	0.02	0.08
hg18_db_tcga_read	0.04	0.01	0.05
hg18_db_tcga_stad	0.05	0.00	0.05
hg18_db_tcga_thca	0.06	0.00	0.06
hg18_db_tcga_ucec	0.05	0.02	0.06
hg18_feature_cancergene	0.01	0.01	0.03
hg18_feature_ensembl	0.32	0.02	0.33
hg18_feature_lincRNA	0.06	0.01	0.08
hg18_feature_mirnas	0.03	0.02	0.05
hg18_feature_oncogene	0.01	0.01	0.03
hg18_feature_tumorsupressor	0.00	0.04	0.03
hg19_armLimits	0.00	0.01	0.02
hg19_db_gsk_bladder	0.06	0.02	0.08
hg19_db_gsk_blood	0.05	0.03	0.08
hg19_db_gsk_bone	0.01	0.01	0.03
hg19_db_gsk_brain	0.05	0.00	0.04
hg19_db_gsk_breast	0.03	0.02	0.05
hg19_db_gsk_cervix	0.03	0.01	0.05
hg19_db_gsk_cns	0.05	0.02	0.06
hg19_db_gsk_colon	0.06	0.02	0.08
hg19_db_gsk_connective_tissue	0.02	0.01	0.03
hg19_db_gsk_esophagus	0.04	0.00	0.03
hg19_db_gsk_eye	0.00	0.02	0.01
hg19_db_gsk_kidney	0.03	0.00	0.03
hg19_db_gsk_liver	0.03	0.01	0.05
hg19_db_gsk_lung	0.05	0.02	0.06
hg19_db_gsk_muscle	0.02	0.01	0.03
hg19_db_gsk_ovary	0.01	0.02	0.03
hg19_db_gsk_pancreas	0.01	0.02	0.03
hg19_db_gsk_pharynx	0.02	0.01	0.03
hg19_db_gsk_placenta	0.04	0.00	0.04
hg19_db_gsk_prostate	0.01	0.02	0.03
hg19_db_gsk_rectum	0.02	0.01	0.03
hg19_db_gsk_sarcoma	0.02	0.02	0.03
hg19_db_gsk_stomach	0.01	0.01	0.04
hg19_db_gsk_synovium	0.00	0.02	0.02
hg19_db_gsk_thyroid	0.03	0.01	0.04
hg19_db_gsk_uterus	0.03	0.02	0.05
hg19_db_nci60	0.05	0.02	0.06
hg19_db_tcga_blca	0.03	0.01	0.05
hg19_db_tcga_brca	0.03	0.02	0.05
hg19_db_tcga_cesc	0.03	0.00	0.03
hg19_db_tcga_coad	0.03	0.01	0.04
hg19_db_tcga_gbm	0.05	0.02	0.07
hg19_db_tcga_hnsc	0.05	0.01	0.06
hg19_db_tcga_kirc	0.06	0.02	0.08
hg19_db_tcga_kirp	0.03	0.00	0.03
hg19_db_tcga_lgg	0.05	0.00	0.05
hg19_db_tcga_lihc	0.03	0.00	0.03
hg19_db_tcga_luad	0.03	0.01	0.04
hg19_db_tcga_lusc	0.05	0.02	0.07
hg19_db_tcga_ov	0.06	0.00	0.06
hg19_db_tcga_prad	0.03	0.02	0.04
hg19_db_tcga_read	0.05	0.01	0.07
hg19_db_tcga_stad	0.04	0.02	0.06
hg19_db_tcga_thca	0.03	0.00	0.03
hg19_db_tcga_ucec	0.07	0.00	0.06
hg19_feature_cancergene	0.00	0.01	0.02
hg19_feature_ensembl	0.64	0.03	0.67
hg19_feature_lincRNA	0.03	0.02	0.05
hg19_feature_mirnas	0.03	0.00	0.03
hg19_feature_oncogene	0.01	0.02	0.03
hg19_feature_tumorsupressor	0.00	0.01	0.01
mm8_armLimits	0.00	0.03	0.04
mm8_feature_ensembl	0.66	0.02	0.67
mm8_feature_mirnas	0.00	0.03	0.03