cheung2010 0.7.0
Vince Carey
| Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/cheung2010 | | Last Changed Rev: 3281 / Revision: 3391 | | Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf cheung2010.buildbin-libdir cheung2010.Rcheck && mkdir cheung2010.buildbin-libdir cheung2010.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cheung2010.buildbin-libdir cheung2010_0.7.0.tar.gz >cheung2010.Rcheck\00install.out 2>&1 && cp cheung2010.Rcheck\00install.out cheung2010-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=cheung2010.buildbin-libdir --install="check:cheung2010-install.out" --force-multiarch --no-vignettes --timings cheung2010_0.7.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/cheung2010.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cheung2010/DESCRIPTION' ... OK
* this is package 'cheung2010' version '0.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cheung2010' can be installed ... OK
* checking installed package size ... NOTE
installed size is 54.3Mb
sub-directories of 1Mb or more:
data 14.0Mb
parts 30.9Mb
rmaexprs 9.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'AnnotationDbi'
All declared Imports should be used.
Packages in Depends field not imported from:
'GGtools' 'GenomicRanges' 'hgfocus.db'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'cheung2010/R/zzz.R':
.onLoad calls:
packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"", pkgname, "\", [chrvec])", sep = ""), "\n", "available chromosomes are named ", selectSome(cn), "\n")
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [31s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
cheung2010locs 6.17 0.07 6.23
** running examples for arch 'x64' ... [34s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
cheung2010locs 6.43 0.02 6.45
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: 'snpStats'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/cheung2010.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'cheung2010' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
No methods found in "IRanges" for requests: aggregate
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
No methods found in "IRanges" for requests: aggregate
install for x64
* installing *source* package 'cheung2010' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
No methods found in "IRanges" for requests: aggregate
* MD5 sums
packaged installation of 'cheung2010' as cheung2010_0.7.0.zip
* DONE (cheung2010)