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BioC experimental data: CHECK report for bsseqData on moscato1

This page was generated on 2015-08-22 17:44:17 -0700 (Sat, 22 Aug 2015).

Package 29/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bsseqData 0.7.1
Kasper Daniel Hansen
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/bsseqData
Last Changed Rev: 3329 / Revision: 3391
Last Changed Date: 2015-06-24 13:17:07 -0700 (Wed, 24 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: bsseqData
Version: 0.7.1
Command: rm -rf bsseqData.buildbin-libdir bsseqData.Rcheck && mkdir bsseqData.buildbin-libdir bsseqData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bsseqData.buildbin-libdir bsseqData_0.7.1.tar.gz >bsseqData.Rcheck\00install.out 2>&1 && cp bsseqData.Rcheck\00install.out bsseqData-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=bsseqData.buildbin-libdir --install="check:bsseqData-install.out" --force-multiarch --no-vignettes --timings bsseqData_0.7.1.tar.gz
StartedAt: 2015-08-22 10:15:50 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 10:35:18 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 1168.3 seconds
RetCode: 0
Status:  OK  
CheckDir: bsseqData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf bsseqData.buildbin-libdir bsseqData.Rcheck && mkdir bsseqData.buildbin-libdir bsseqData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bsseqData.buildbin-libdir bsseqData_0.7.1.tar.gz >bsseqData.Rcheck\00install.out 2>&1 && cp bsseqData.Rcheck\00install.out bsseqData-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=bsseqData.buildbin-libdir --install="check:bsseqData-install.out" --force-multiarch --no-vignettes --timings bsseqData_0.7.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/bsseqData.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bsseqData/DESCRIPTION' ... OK
* this is package 'bsseqData' version '0.7.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bsseqData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 200.8Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [11s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/bsseqData.Rcheck/00check.log'
for details.


bsseqData.Rcheck/00install.out:


install for i386

* installing *source* package 'bsseqData' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'bsseqData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bsseqData' as bsseqData_0.7.1.zip
* DONE (bsseqData)

bsseqData.Rcheck/examples_i386/bsseqData-Ex.timings:

nameusersystemelapsed
BS.cancer.ex2.110.102.20
BS.cancer.ex.fit3.170.283.44
BS.cancer.ex.tstat0.560.060.63
keepLoci.ex000

bsseqData.Rcheck/examples_x64/bsseqData-Ex.timings:

nameusersystemelapsed
BS.cancer.ex1.750.161.91
BS.cancer.ex.fit2.090.362.45
BS.cancer.ex.tstat0.240.090.33
keepLoci.ex000