RforProteomics 1.7.1
Laurent Gatto
| Snapshot Date: 2015-06-13 06:15:21 -0700 (Sat, 13 Jun 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RforProteomics | | Last Changed Rev: 3313 / Revision: 3315 | | Last Changed Date: 2015-06-11 16:54:28 -0700 (Thu, 11 Jun 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | TIMEOUT | skipped | skipped | |
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### Running command:
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### rm -rf RforProteomics.buildbin-libdir RforProteomics.Rcheck && mkdir RforProteomics.buildbin-libdir RforProteomics.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RforProteomics.buildbin-libdir RforProteomics_1.7.1.tar.gz >RforProteomics.Rcheck\00install.out 2>&1 && cp RforProteomics.Rcheck\00install.out RforProteomics-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=RforProteomics.buildbin-libdir --install="check:RforProteomics-install.out" --force-multiarch --no-vignettes --timings RforProteomics_1.7.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/RforProteomics.Rcheck'
* using R version 3.2.1 beta (2015-06-07 r68485)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RforProteomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RforProteomics' version '1.7.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RforProteomics' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.5Mb
sub-directories of 1Mb or more:
doc 5.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
shinyMA : <anonymous>: no visible global function definition for
'exprs'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [74s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
id 12.89 0.07 32.93
proteomicsPackages 11.31 0.11 15.53
getThermoHelaPRTC 0.02 0.00 17.56
** running examples for arch 'x64' ... [54s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
id 17.69 0.09 24.81
proteomicsPackages 12.76 0.10 17.94
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/RforProteomics.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'RforProteomics' ...
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
install for x64
* installing *source* package 'RforProteomics' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'RforProteomics' as RforProteomics_1.7.1.zip
* DONE (RforProteomics)