BioC experimental data: CHECK report for RIPSeekerData on zin1

Package: RIPSeekerData

Version: 1.5.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RIPSeekerData_1.5.0.tar.gz

StartedAt: 2015-08-22 08:31:01 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 08:31:45 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 44.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: RIPSeekerData.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings RIPSeekerData_1.5.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/RIPSeekerData.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RIPSeekerData/DESCRIPTION’ ... OK
* this is package ‘RIPSeekerData’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RIPSeekerData’ can be installed ... [6s/7s] OK
* checking installed package size ... NOTE
  installed size is 66.0Mb
  sub-directories of 1Mb or more:
    extdata  65.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'RIPSeekerData.Rd':
  ‘[GenomicRanges]{GappedAlignments}’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/RIPSeekerData.Rcheck/00check.log’
for details.

* installing *source* package ‘RIPSeekerData’ ...
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RIPSeekerData)