BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on perceval

Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.103.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.103.0.tar.gz

StartedAt: 2015-08-22 09:30:41 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:32:04 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 83.1 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.103.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.103.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/22s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.498	0.053	0.554
GSE11906	3.039	0.157	3.242
GSE14924_CD4	0.413	0.045	0.500
GSE14924_CD8	0.347	0.044	0.418
GSE16759	0.342	0.036	0.461
GSE19420	0.281	0.041	0.354
GSE20164	0.099	0.038	0.160
GSE22780	0.273	0.034	0.338
GSE23878	0.920	0.056	1.040
GSE24739_G0	0.477	0.040	0.524
GSE24739_G1	0.476	0.041	0.564
GSE30153	0.582	0.038	0.642
GSE32676	0.800	0.050	0.861
GSE38666_epithelia	0.434	0.044	0.576
GSE38666_stroma	0.262	0.031	0.417
GSE4183	0.336	0.036	0.662
GSE42057	1.041	0.056	1.205
GSE7305	0.727	0.044	0.897
KEGGandMetacoreDzPathwaysGEO-package	0.779	0.085	1.063