BioC experimental data: CHECK report for CardinalWorkflows on moscato1

Package: CardinalWorkflows

Version: 1.1.0

Command: rm -rf CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && mkdir CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CardinalWorkflows.buildbin-libdir CardinalWorkflows_1.1.0.tar.gz >CardinalWorkflows.Rcheck\00install.out 2>&1 && cp CardinalWorkflows.Rcheck\00install.out CardinalWorkflows-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=CardinalWorkflows.buildbin-libdir --install="check:CardinalWorkflows-install.out" --force-multiarch --no-vignettes --timings CardinalWorkflows_1.1.0.tar.gz

StartedAt: 2015-08-22 10:17:25 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 10:30:59 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 814.4 seconds

RetCode: 0

Status:  OK

CheckDir: CardinalWorkflows.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && mkdir CardinalWorkflows.buildbin-libdir CardinalWorkflows.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CardinalWorkflows.buildbin-libdir CardinalWorkflows_1.1.0.tar.gz >CardinalWorkflows.Rcheck\00install.out 2>&1 && cp CardinalWorkflows.Rcheck\00install.out CardinalWorkflows-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=CardinalWorkflows.buildbin-libdir --install="check:CardinalWorkflows-install.out" --force-multiarch --no-vignettes --timings CardinalWorkflows_1.1.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/CardinalWorkflows.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CardinalWorkflows/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CardinalWorkflows' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CardinalWorkflows' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 140.9Mb
  sub-directories of 1Mb or more:
    data  134.8Mb
    doc     6.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [38s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
rcc-data      16.38   0.39   16.78
cardinal-data 10.78   0.23   11.01
pig206-data    6.03   0.20    6.23
** running examples for arch 'x64' ... [33s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
rcc-data      11.13   0.45   11.59
cardinal-data  9.10   0.28    9.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'CardinalWorkflows' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CardinalWorkflows' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CardinalWorkflows' as CardinalWorkflows_1.1.0.zip
* DONE (CardinalWorkflows)

name	user	system	elapsed
cardinal-data	10.78	0.23	11.01
pig206-data	6.03	0.20	6.23
rcc-data	16.38	0.39	16.78

name	user	system	elapsed
cardinal-data	9.10	0.28	9.37
pig206-data	4.51	0.19	4.70
rcc-data	11.13	0.45	11.59