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BioC 3.2: CHECK report for miRLAB on perceval

This page was generated on 2015-11-10 14:50:01 -0800 (Tue, 10 Nov 2015).

Package 652/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRLAB 1.0.0
Thuc Duy Le
Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/miRLAB
Last Changed Rev: 109589 / Revision: 110496
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: miRLAB
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRLAB_1.0.0.tar.gz
StartedAt: 2015-11-10 07:06:16 -0800 (Tue, 10 Nov 2015)
EndedAt: 2015-11-10 07:09:52 -0800 (Tue, 10 Nov 2015)
EllapsedTime: 216.3 seconds
RetCode: 0
Status:  OK 
CheckDir: miRLAB.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings miRLAB_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/miRLAB.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRLAB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘miRLAB’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRLAB’ can be installed ... [19s/19s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [9s/9s]
 [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

miRLAB.Rcheck/00install.out:

* installing *source* package ‘miRLAB’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRLAB)

miRLAB.Rcheck/miRLAB-Ex.timings:

nameusersystemelapsed
Borda0.1200.0040.124
BordaTopk0.0820.0010.083
Dcov0.4410.0050.463
Elastic0.0760.0010.077
Extopk0.0130.0000.014
GOBPenrichment0.0010.0000.000
Hoeffding0.0370.0020.038
IDA0.0650.0040.069
ImputeNormData0.0130.0010.015
KEGGenrichment0.0010.0000.001
Kendall0.0150.0000.015
Lasso0.0570.0010.058
MI0.0810.0010.083
Pearson0.0110.0000.011
ProMISe0.0200.0010.020
RDC0.0750.0030.078
Read0.0040.0010.004
Spearman0.0130.0000.014
Standardise0.0000.0000.001
ValidateAll0.0010.0000.001
Validation0.0210.0000.022
ValidationT0.0010.0000.001
Zscore0.0140.0000.015
bRank0.0150.0000.015
filterAndCompare0.0010.0000.001
getData000
readHeader0.0080.0010.009