Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: INSTALL report for mgsa on windows1.bioconductor.org

This page was generated on 2015-10-27 17:29:21 -0400 (Tue, 27 Oct 2015).

Package 640/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mgsa 1.18.0
Sebastian Bauer
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/mgsa
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: mgsa
Version: 1.18.0
Command: C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/mgsa_1.18.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch mgsa_1.18.0.tar.gz && rm mgsa_1.18.0.tar.gz
StartedAt: 2015-10-26 20:06:30 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:06:37 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 6.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/mgsa_1.18.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch mgsa_1.18.0.tar.gz && rm mgsa_1.18.0.tar.gz
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  216k  100  216k    0     0  3761k      0 --:--:-- --:--:-- --:--:-- 70.3M

install for i386

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'mgsa' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c mgsa.c -o mgsa.o
mgsa.c: In function 'ts_R_alloc':
mgsa.c:57:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:1492:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
mgsa.c:1498:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
gcc -m32 -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/mgsa/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'mgsa'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'mgsa' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mgsa.c -o mgsa.o
mgsa.c: In function 'ts_R_alloc':
mgsa.c:57:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:1492:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
mgsa.c:1498:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
gcc -m64 -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/mgsa/libs/x64
** testing if installed package can be loaded
* DONE (mgsa)