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BioC 3.2: CHECK report for globaltest on windows1.bioconductor.org

This page was generated on 2015-10-23 13:24:19 -0400 (Fri, 23 Oct 2015).

Package 444/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
globaltest 5.24.0
Jelle Goeman
Snapshot Date: 2015-10-22 19:24:08 -0400 (Thu, 22 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/globaltest
Last Changed Rev: 109589 / Revision: 109845
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: globaltest
Version: 5.24.0
Command: rm -rf globaltest.buildbin-libdir globaltest.Rcheck && mkdir globaltest.buildbin-libdir globaltest.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=globaltest.buildbin-libdir globaltest_5.24.0.tar.gz >globaltest.Rcheck\00install.out 2>&1 && cp globaltest.Rcheck\00install.out globaltest-install.out && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=globaltest.buildbin-libdir --install="check:globaltest-install.out" --force-multiarch --no-vignettes --timings globaltest_5.24.0.tar.gz
StartedAt: 2015-10-23 02:24:07 -0400 (Fri, 23 Oct 2015)
EndedAt: 2015-10-23 02:25:52 -0400 (Fri, 23 Oct 2015)
EllapsedTime: 105.1 seconds
RetCode: 0
Status:  OK  
CheckDir: globaltest.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf globaltest.buildbin-libdir globaltest.Rcheck && mkdir globaltest.buildbin-libdir globaltest.Rcheck && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=globaltest.buildbin-libdir globaltest_5.24.0.tar.gz >globaltest.Rcheck\00install.out 2>&1 && cp globaltest.Rcheck\00install.out globaltest-install.out  && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=globaltest.buildbin-libdir --install="check:globaltest-install.out" --force-multiarch --no-vignettes --timings globaltest_5.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/globaltest.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'Rgraphviz' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/biocbld/bbs-3.2-bioc/meat/globaltest.Rcheck/00check.log'
for details.


globaltest.Rcheck/00install.out:


install for i386

* installing *source* package 'globaltest' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'sort' from package 'base' in package 'globaltest'
Creating a generic function for 'model.matrix' from package 'stats' in package 'globaltest'
Creating a generic function for 'coefficients' from package 'stats' in package 'globaltest'
Creating a generic function for 'fitted.values' from package 'stats' in package 'globaltest'
Creating a generic function for 'residuals' from package 'stats' in package 'globaltest'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'globaltest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'globaltest' as globaltest_5.24.0.zip
* DONE (globaltest)

globaltest.Rcheck/examples_i386/globaltest-Ex.timings:

nameusersystemelapsed
comparative1.030.001.04
diagnostics0.310.010.32
genesettesting000
goodnessoffit0.560.020.58
gt0.310.000.31
gt.object-class0.330.000.33
gtoptions000
mlogit000
multtest0.200.000.21

globaltest.Rcheck/examples_x64/globaltest-Ex.timings:

nameusersystemelapsed
comparative1.070.001.07
diagnostics0.360.020.38
genesettesting000
goodnessoffit0.520.000.51
gt0.340.000.35
gt.object-class0.550.000.54
gtoptions000
mlogit0.010.000.02
multtest0.220.010.23