ggtree 1.2.3
Guangchuang Yu
| Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/ggtree | | Last Changed Rev: 109949 / Revision: 110496 | | Last Changed Date: 2015-10-26 18:55:03 -0700 (Mon, 26 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggtree
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* checking for file ‘ggtree/DESCRIPTION’ ... OK
* preparing ‘ggtree’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
anyDuplicated, append, as.data.frame, as.vector, cbind,
colnames, do.call, duplicated, eval, evalq, Filter, Find, get,
grep, grepl, intersect, is.unsorted, lapply, lengths, Map,
mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, Position, rank, rbind, Reduce, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unlist, unsplit
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: IRanges
Loading required package: XVector
Note: the specification for S3 class "AsIs" in package 'jsonlite' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
Attaching package: 'ggtree'
The following object is masked from 'package:ape':
rotate
The following objects are masked from 'package:Biostrings':
collapse, mask
The following objects are masked from 'package:IRanges':
collapse, expand
Warning: Removed 12 rows containing missing values (geom_text).
Warning: Removed 12 rows containing missing values (geom_text).
Warning: Removed 12 rows containing missing values (geom_text).
Warning: Removed 4 rows containing missing values (geom_segment).
Warning: Removed 4 rows containing missing values (geom_segment).
Warning: Removed 12 rows containing missing values (geom_text).
Warning: Removed 148 rows containing missing values (geom_text).
Warning: Removed 4 rows containing missing values (geom_text).
Warning: Removed 2 rows containing missing values (geom_text).
Warning: Removed 1 rows containing missing values (geom_text).
Quitting from lines 490-499 (ggtree.Rmd)
Error: processing vignette 'ggtree.Rmd' failed with diagnostics:
there is no package called 'phangorn'
Execution halted