BioC 3.2: CHECK report for conumee on windows1.bioconductor.org

Package: conumee

Version: 1.2.0

Command: C:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings conumee_1.2.0.tar.gz

StartedAt: 2015-10-27 00:53:35 -0400 (Tue, 27 Oct 2015)

EndedAt: 2015-10-27 01:10:37 -0400 (Tue, 27 Oct 2015)

EllapsedTime: 1022.1 seconds

RetCode: 1

Status:  ERROR

CheckDir: conumee.Rcheck

Warnings: NA

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### Running command:
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###   C:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings conumee_1.2.0.tar.gz
###
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* using log directory 'C:/biocbld/bbs-3.2-bioc/meat/conumee.Rcheck'
* using R version 3.2.2 Patched (2015-08-16 r69094)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'conumee/DESCRIPTION' ... OK
* this is package 'conumee' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'conumee' can be installed ... [22s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CNV.load,matrix : .local: no visible binding for global variable 'anno'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'conumee-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read.450k.url
> ### Title: read.450k.url
> ### Aliases: read.450k.url
> 
> ### ** Examples
> 
> RGsetTCGA <- read.450k.url()
downloading 6042324037_R05C02_Grn.idat - done.
Error in .curl(url = paste0(url, i), file = paste0(tmp, i)) : 
  url does not exist.
Calls: read.450k.url -> .curl
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  'C:/biocbld/bbs-3.2-bioc/meat/conumee.Rcheck/00check.log'
for details.

* installing *source* package 'conumee' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (conumee)

name	user	system	elapsed
CNV.analysis-class	89.89	1.08	90.97
CNV.anno-class	40.42	0.09	40.52
CNV.bin	46.14	0.41	46.56
CNV.create_anno	40.73	0.04	40.78
CNV.data-class	1.28	0.08	1.36
CNV.detail	44.65	0.35	44.99
CNV.detailplot	95.67	0.67	96.34
CNV.detailplot_wrap	102.25	0.64	102.92
CNV.fit	51.83	0.37	52.21
CNV.genomeplot	97.81	0.60	98.46
CNV.load	1.74	0.12	1.86
CNV.segment	95.64	0.32	95.99
CNV.write	94.29	0.57	94.91