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BioC 3.2: BUILD report for RamiGO on windows1.bioconductor.org

This page was generated on 2015-10-27 17:29:35 -0400 (Tue, 27 Oct 2015).

Package 836/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RamiGO 1.16.0
Markus Schroeder
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RamiGO
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RamiGO
Version: 1.16.0
Command: chmod a+r RamiGO -R && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RamiGO
StartedAt: 2015-10-26 21:08:40 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:08:56 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 16.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r RamiGO -R && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RamiGO
###
##############################################################################
##############################################################################


* checking for file 'RamiGO/DESCRIPTION' ... OK
* preparing 'RamiGO':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...
Saving output to 'C:/biocbld/bbs-3.2-bioc/tmpdir/Rtmp2ZAxBu/Rbuild8f074c810c9/RamiGO/build/RamiGO.pdf' ...
Done
* creating vignettes ...Warning: running command '"C:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: gsubfn
Loading required package: proto
Note: the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

Error: processing vignette 'RamiGO.Rnw' failed with diagnostics:
 chunk 5 (label = getAmigoTreeDOT) 
Error in `[<-`(`*tmp*`, relations[i, "parent"], relations[i, "child"],  : 
  subscript out of bounds
Execution halted