BioC 3.2: CHECK report for Prize on perceval

Package: Prize

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz

StartedAt: 2015-11-10 08:15:54 -0800 (Tue, 10 Nov 2015)

EndedAt: 2015-11-10 08:17:52 -0800 (Tue, 10 Nov 2015)

EllapsedTime: 118.9 seconds

RetCode: 0

Status:  OK

CheckDir: Prize.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Prize_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/Prize.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Prize/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Prize’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Prize’ can be installed ... [3s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [69s/69s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
Prize-package 8.626  0.080   8.718
gaggregate    6.104  0.005   6.110
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [12s/12s]
 [13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘Prize’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Prize)

name	user	system	elapsed
AIJ	3.171	0.011	3.182
AIP	2.003	0.003	2.006
CI	2.999	0.003	3.002
GCR	2.996	0.009	3.005
ICR	4.862	0.020	4.941
IP	4.926	0.014	4.939
Prize-package	8.626	0.080	8.718
RM	0.490	0.003	0.492
ahmatrix	0.001	0.000	0.002
ahp	0.488	0.001	0.489
ahp_matrix	0.002	0.000	0.002
ahp_plot	3.821	0.048	3.868
ahp_weights	3.853	0.046	3.900
ahplot	0.023	0.001	0.027
crplot	0.239	0.001	0.242
dplot	0.162	0.001	0.163
gaggregate	6.104	0.005	6.110
pipeline	3.814	0.051	3.865
rainbow_plot	3.906	0.053	3.959
rainbowplot	0.250	0.001	0.251
rating	0.992	0.001	0.993
saaty_inconsistency	4.838	0.053	4.892
simulation	3.869	0.051	3.921
weight	1.068	0.004	1.073
weight_plot	3.778	0.050	3.828
wplot	0.404	0.003	0.407