GeneBreak 1.0.0
Evert van den Broek
| Snapshot Date: 2016-04-21 16:20:06 -0700 (Thu, 21 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GeneBreak | | Last Changed Rev: 109589 / Revision: 116677 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf GeneBreak.buildbin-libdir GeneBreak.Rcheck && mkdir GeneBreak.buildbin-libdir GeneBreak.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GeneBreak.buildbin-libdir GeneBreak_1.0.0.tar.gz >GeneBreak.Rcheck\00install.out 2>&1 && cp GeneBreak.Rcheck\00install.out GeneBreak-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=GeneBreak.buildbin-libdir --install="check:GeneBreak-install.out" --force-multiarch --no-vignettes --timings GeneBreak_1.0.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/GeneBreak.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneBreak/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GeneBreak' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneBreak' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [113s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
CopyNumberBreakPointGenes-class 15.30 0.23 15.53
bpPlot-CopyNumberBreakPoints-method 11.79 0.24 12.03
recurrentGenes-CopyNumberBreakPointGenes-method 11.46 0.14 11.61
bpStats-CopyNumberBreakPoints-method 11.34 0.12 11.46
featureInfo-CopyNumberBreakPoints-method 5.67 0.18 5.83
bpGenes-CopyNumberBreakPointGenes-method 5.01 0.17 5.18
** running examples for arch 'x64' ... [115s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
CopyNumberBreakPointGenes-class 13.51 0.11 14.02
bpPlot-CopyNumberBreakPoints-method 12.59 0.21 12.80
bpStats-CopyNumberBreakPoints-method 12.43 0.18 12.62
recurrentGenes-CopyNumberBreakPointGenes-method 9.64 0.14 9.78
featureInfo-CopyNumberBreakPoints-method 6.33 0.22 6.55
breakpointsPerGene-CopyNumberBreakPointGenes-method 6.26 0.25 6.51
bpGenes-CopyNumberBreakPointGenes-method 5.96 0.25 6.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
install for i386
* installing *source* package 'GeneBreak' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'segmentData' in package 'GeneBreak'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GeneBreak' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneBreak' as GeneBreak_1.0.0.zip
* DONE (GeneBreak)