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BioC 3.2: INSTALL report for ACME on windows1.bioconductor.org

This page was generated on 2015-10-27 17:28:19 -0400 (Tue, 27 Oct 2015).

Package 12/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.26.0
Sean Davis
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/ACME
Last Changed Rev: 109589 / Revision: 109947
Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ACME
Version: 2.26.0
Command: C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/ACME_2.26.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch ACME_2.26.0.tar.gz && rm ACME_2.26.0.tar.gz
StartedAt: 2015-10-26 20:03:24 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 20:03:34 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 10.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/ACME_2.26.0.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch ACME_2.26.0.tar.gz && rm ACME_2.26.0.tar.gz
###
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100 9442k  100 9442k    0     0   185M      0 --:--:-- --:--:-- --:--:--  200M

install for i386

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'ACME' ...
** libs
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:63:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type [enabled by default]
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun') [enabled by default]
gcc -m32 -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/ACME/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ACME'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'ACME' ...
** libs
gcc -m64 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:63:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type [enabled by default]
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun') [enabled by default]
gcc -m64 -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/ACME/libs/x64
** testing if installed package can be loaded
* DONE (ACME)