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BioC 3.2: CHECK report for sbgr on zin1

This page was generated on 2015-08-24 10:50:46 -0700 (Mon, 24 Aug 2015).

Package 917/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sbgr 0.99.6
Nan Xiao
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sbgr
Last Changed Rev: 107692 / Revision: 107696
Last Changed Date: 2015-08-22 19:38:05 -0700 (Sat, 22 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]YES, new version is higher than in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK YES, new version is higher than in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK YES, new version is higher than in internal repository

Summary

Package: sbgr
Version: 0.99.6
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings sbgr_0.99.6.tar.gz
StartedAt: 2015-08-24 03:36:22 -0700 (Mon, 24 Aug 2015)
EndedAt: 2015-08-24 03:36:46 -0700 (Mon, 24 Aug 2015)
EllapsedTime: 23.6 seconds
RetCode: 0
Status:  OK 
CheckDir: sbgr.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings sbgr_0.99.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-bioc/meat/sbgr.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sbgr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sbgr’ version ‘0.99.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sbgr’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [1s/1s]
 [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

sbgr.Rcheck/00install.out:

* installing *source* package ‘sbgr’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sbgr)

sbgr.Rcheck/sbgr-Ex.timings:

nameusersystemelapsed
Auth-class0.0040.0000.004
Metadata0.0400.0000.039
Task-class0.0110.0000.011
billing0.0000.0000.001
file_copy0.0000.0000.001
file_delete0.0010.0000.000
file_details0.0010.0000.000
file_download_url0.0010.0000.000
file_list0.0000.0000.001
file_meta_update0.0000.0000.001
misc_get_auth_token0.0000.0000.001
misc_get_uploader0.0010.0000.000
misc_make_metadata000
misc_upload_cli000
pipeline_add0.0000.0000.001
pipeline_details0.0000.0000.001
pipeline_list_my000
pipeline_list_project0.0010.0000.000
pipeline_list_pub0.0010.0000.000
project_delete000
project_details0.0000.0000.001
project_list0.0000.0000.001
project_member_add000
project_member_delete0.0010.0000.000
project_member_update0.0010.0000.000
project_members000
project_new0.0000.0000.001
sbgapi0.0000.0000.001
task_action000
task_details0.0010.0000.000
task_list0.0010.0000.000
task_run0.0000.0000.001
upload_complete_all0.0010.0000.000
upload_complete_part000
upload_delete000
upload_info0.0000.0000.001
upload_info_part0.0000.0000.001
upload_init000