openCyto 1.8.1
Mike Jiang
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/openCyto | | Last Changed Rev: 109947 / Revision: 109947 | | Last Changed Date: 2015-10-26 18:02:35 -0400 (Mon, 26 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | | |
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | ERROR | skipped | skipped | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | ERROR | ERROR | skipped | skipped | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | ERROR | ERROR | skipped | skipped | |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin64\bin\curl.exe -O http://linux1.bioconductor.org/BBS/3.2/bioc/src/contrib/openCyto_1.8.1.tar.gz && C:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.8.1.tar.gz && rm openCyto_1.8.1.tar.gz
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 109k 100 109k 0 0 17.7M 0 --:--:-- --:--:-- --:--:-- 53.3M
install for i386
* installing to library 'C:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
misc.cpp:21:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"C:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"C:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m32 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LC:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to C:/biocbld/bbs-3.2-bioc/R/library/openCyto/libs/i386
** R
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace 'flowStats' 3.28.1 is being loaded, but >= 3.29.1 is required
ERROR: lazy loading failed for package 'openCyto'
* removing 'C:/biocbld/bbs-3.2-bioc/R/library/openCyto'
* restoring previous 'C:/biocbld/bbs-3.2-bioc/R/library/openCyto'
Warning: running command 'C:/biocbld/bbs-3.2-bioc/R/bin/i386/Rcmd.exe INSTALL openCyto_1.8.1.tar.gz --no-multiarch' had status 1