Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: INSTALL report for openCyto on moscato1

This page was generated on 2015-08-20 13:22:07 -0700 (Thu, 20 Aug 2015).

Package 708/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 1.7.4
Mike Jiang
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/openCyto
Last Changed Rev: 106402 / Revision: 107602
Last Changed Date: 2015-07-14 16:45:23 -0700 (Tue, 14 Jul 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: openCyto
Version: 1.7.4
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/openCyto_1.7.4.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.7.4.tar.gz && rm openCyto_1.7.4.tar.gz
StartedAt: 2015-08-19 19:19:34 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 19:20:20 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 46.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/openCyto_1.7.4.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.7.4.tar.gz && rm openCyto_1.7.4.tar.gz
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  109k  100  109k    0     0  5139k      0 --:--:-- --:--:-- --:--:-- 8387k

install for i386

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
misc.cpp:21:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m32 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/openCyto/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'HowToWriteCSVTemplate.Rmd' 
   'openCytoVignette.Rmd' 
** testing if installed package can be loaded

install for x64

* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -mtune=core2 -c misc.cpp -o misc.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG    -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"d:/RCompile/r-compiling/local/local320/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m64 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/R/library/openCyto/libs/x64
** testing if installed package can be loaded
* DONE (openCyto)