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BioC 3.2: BUILD report for imageHTS on moscato1

This page was generated on 2015-08-20 13:19:49 -0700 (Thu, 20 Aug 2015).

Package 506/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
imageHTS 1.19.0
Joseph Barry
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/imageHTS
Last Changed Rev: 102594 / Revision: 107602
Last Changed Date: 2015-04-16 13:02:44 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: imageHTS
Version: 1.19.0
Command: chmod a+r imageHTS -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data imageHTS
StartedAt: 2015-08-19 20:45:59 -0700 (Wed, 19 Aug 2015)
EndedAt: 2015-08-19 20:57:38 -0700 (Wed, 19 Aug 2015)
EllapsedTime: 699.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r imageHTS -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD build --keep-empty-dirs --no-resave-data imageHTS
###
##############################################################################
##############################################################################


* checking for file 'imageHTS/DESCRIPTION' ... OK
* preparing 'imageHTS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: EBImage

Attaching package: 'EBImage'

The following object is masked _by_ '.GlobalEnv':

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
    parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    as.vector, cbind, colnames, do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rep.int, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unlist, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To
    cite Bioconductor, see 'citation("Biobase")', and for packages
    'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:EBImage':

    channel

Loading required package: genefilter

Attaching package: 'genefilter'

The following object is masked from 'package:base':

    anyNA

Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt'
Warning in fileHTS(x, type = type, ..., access = access) :
  cannot download the file pointed by "http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt" to the location "D:/biocbld/bbs-3.2-bioc/tmpdir/RtmpOkrfXk/kimorph/conf/imageconf.txt"

Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics:
 chunk 28 (label = init) 
Error in readHTS(x, type = "file", filename = filename, access = access,  : 
  cannot find filename=D:/biocbld/bbs-3.2-bioc/tmpdir/RtmpOkrfXk/kimorph/conf/imageconf.txt
Execution halted