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BioC 3.2: BUILD report for RMassBank on zin1

This page was generated on 2015-08-24 10:48:53 -0700 (Mon, 24 Aug 2015).

Package 863/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RMassBank 1.11.0
RMassBank at Eawag
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RMassBank
Last Changed Rev: 104471 / Revision: 107696
Last Changed Date: 2015-06-02 07:52:32 -0700 (Tue, 02 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RMassBank
Version: 1.11.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank
StartedAt: 2015-08-23 19:17:16 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 19:19:58 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 162.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank
###
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* checking for file ‘RMassBank/DESCRIPTION’ ... OK
* preparing ‘RMassBank’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
msmsWorkflow: Step 1. Acquire all MSMS spectra from files

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  |================================================================| 100%msmsWorkflow: Step 2. First analysis pre recalibration

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msmsWorkflow: Step 3. Aggregate all spectra
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
Loading required package: gplots

Attaching package: ‘gplots’

The following object is masked from ‘package:stats’:

    lowess

msmsWorkflow: Done.
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
msmsWorkflow: Done.
msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra
msmsWorkflow: Done.
msmsWorkflow: Step 5. Reanalyze recalibrated spectra

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msmsWorkflow: Step 6. Aggregate recalibrated results
msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O

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msmsWorkflow: Step 8. Peak multiplicity filtering
msmsWorkflow: Done.
mbWorkflow: Step 1. Gather info from several databases

Error: processing vignette 'RMassBank.Rnw' failed with diagnostics:
 chunk 22 
Error in strsplit(inchikey, "=", fixed = TRUE) : non-character argument
Execution halted