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BioC 3.2: CHECK report for Prize on moscato1

This page was generated on 2015-08-20 13:24:22 -0700 (Thu, 20 Aug 2015).

Package 772/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Prize 0.99.16
Daryanaz Dargahi
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Prize
Last Changed Rev: 105514 / Revision: 107602
Last Changed Date: 2015-06-25 14:35:13 -0700 (Thu, 25 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Prize
Version: 0.99.16
Command: rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_0.99.16.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_0.99.16.tar.gz
StartedAt: 2015-08-20 08:50:14 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 08:54:30 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 255.8 seconds
RetCode: 0
Status:  OK  
CheckDir: Prize.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_0.99.16.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_0.99.16.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/Prize.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Prize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Prize' version '0.99.16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Prize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [73s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
Prize-package 9.01   0.01    9.06
gaggregate    6.48   0.00    6.47
IP            5.10   0.00    5.10
** running examples for arch 'x64' ... [87s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
Prize-package       10.53   0.02   11.40
gaggregate           7.86   0.00    7.86
IP                   6.51   0.00    6.51
saaty_inconsistency  6.08   0.00    6.08
ICR                  5.74   0.00    5.74
rainbow_plot         5.18   0.02    5.19
ahp_weights          5.18   0.00    5.18
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [13s]
 [14s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [15s]
 [15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Prize.Rcheck/00install.out:


install for i386

* installing *source* package 'Prize' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Prize' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Prize' as Prize_0.99.16.zip
* DONE (Prize)

Prize.Rcheck/examples_i386/Prize-Ex.timings:

nameusersystemelapsed
AIJ3.200.003.19
AIP2.340.002.34
CI3.450.003.45
GCR3.320.003.32
ICR4.760.004.76
IP5.10.05.1
Prize-package9.010.019.06
RM0.470.000.47
ahmatrix000
ahp0.630.000.62
ahp_matrix0.010.000.02
ahp_plot4.090.004.08
ahp_weights4.020.004.03
ahplot0.010.000.02
crplot0.250.000.25
dplot0.180.000.17
gaggregate6.480.006.47
pipeline3.930.003.93
rainbow_plot4.750.004.76
rainbowplot0.240.000.23
rating1.230.001.24
saaty_inconsistency4.810.004.80
simulation3.650.003.65
weight0.780.000.78
weight_plot4.440.004.45
wplot0.350.000.34

Prize.Rcheck/examples_x64/Prize-Ex.timings:

nameusersystemelapsed
AIJ3.790.003.79
AIP2.50.02.5
CI4.190.004.20
GCR4.230.014.24
ICR5.740.005.74
IP6.510.006.51
Prize-package10.53 0.0211.40
RM0.70.00.7
ahmatrix000
ahp0.640.000.64
ahp_matrix000
ahp_plot4.770.004.77
ahp_weights5.180.005.18
ahplot0.030.000.03
crplot0.280.000.29
dplot0.160.000.28
gaggregate7.860.007.86
pipeline4.560.004.56
rainbow_plot5.180.025.19
rainbowplot0.290.010.32
rating1.050.001.04
saaty_inconsistency6.080.006.08
simulation4.260.004.26
weight1.510.021.53
weight_plot4.260.004.26
wplot0.560.000.56