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BioC 3.2: BUILD report for PSICQUIC on linux1.bioconductor.org

This page was generated on 2015-10-27 17:26:13 -0400 (Tue, 27 Oct 2015).

Package 812/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PSICQUIC 1.8.1
Paul Shannon
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/PSICQUIC
Last Changed Rev: 109620 / Revision: 109947
Last Changed Date: 2015-10-14 13:04:03 -0400 (Wed, 14 Oct 2015)
linux1.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
windows1.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  OK  OK  ERROR  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: PSICQUIC
Version: 1.8.1
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PSICQUIC
StartedAt: 2015-10-26 23:02:36 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 23:02:50 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 14.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PSICQUIC
###
##############################################################################
##############################################################################


* checking for file ‘PSICQUIC/DESCRIPTION’ ... OK
* preparing ‘PSICQUIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Loading required package: S4Vectors
Loading required package: stats4
Loading required package: biomaRt
Loading required package: httr
Loading required package: plyr

Attaching package: ‘plyr’

The following object is masked from ‘package:IRanges’:

    desc

The following object is masked from ‘package:S4Vectors’:

    rename

Warning in .loadRegistry() :
  failed to get response from PSICQUIC registry at http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=ACTIVE&format=txt

Error: processing vignette 'PSICQUIC.Rnw' failed with diagnostics:
 chunk 1 (label = listProviders) 
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function ‘providers’ for signature ‘"logical"’
Execution halted