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BioC 3.2: BUILD report for IONiseR on moscato1

This page was generated on 2015-08-20 13:24:20 -0700 (Thu, 20 Aug 2015).

Package 519/1069HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IONiseR 0.99.9
Mike Smith
Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IONiseR
Last Changed Rev: 107581 / Revision: 107602
Last Changed Date: 2015-08-19 09:37:59 -0700 (Wed, 19 Aug 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: IONiseR
Version: 0.99.9
Command: chmod a+r IONiseR -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data IONiseR
StartedAt: 2015-08-20 00:11:07 -0700 (Thu, 20 Aug 2015)
EndedAt: 2015-08-20 00:11:59 -0700 (Thu, 20 Aug 2015)
EllapsedTime: 51.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r IONiseR -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data IONiseR
###
##############################################################################
##############################################################################


* checking for file 'IONiseR/DESCRIPTION' ... OK
* preparing 'IONiseR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "D:\biocbld\bbs-3.2-bioc\tmpdir\Rtmpmus6RA\Rinst494c698b43e7" --no-multiarch "D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmpmus6RA/Rbuild494c3e707dc5/IONiseR"' had status 1
      -----------------------------------
* installing *source* package 'IONiseR' ...
** R
** inst
** preparing package for lazy loading
in method for 'readInfo' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for 'rawData' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for 'baseCalled' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for 'fastq' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for '[' with signature '"Fast5Summary","ANY"': no definition for class "Fast5Summary"
in method for 'fastqTemplate' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for 'fastqComplement' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
in method for 'fastq2D' with signature 'x="Fast5Summary"': no definition for class "Fast5Summary"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : undefined exports: plotYield
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'D:/biocbld/bbs-3.2-bioc/tmpdir/Rtmpmus6RA/Rinst494c698b43e7/IONiseR'
      -----------------------------------
ERROR: package installation failed