DChIPRep 1.0.1
Bernd Klaus
| Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/DChIPRep | | Last Changed Rev: 109917 / Revision: 109947 | | Last Changed Date: 2015-10-26 02:31:00 -0400 (Mon, 26 Oct 2015) |
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### Running command:
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### /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DChIPRep
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* checking for file ‘DChIPRep/DESCRIPTION’ ... OK
* preparing ‘DChIPRep’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Attaching package: 'rmarkdown'
The following objects are masked from 'package:BiocStyle':
html_document, output_format, pdf_document
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, as.vector,
cbind, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unlist, unsplit
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: Rcpp
Loading required package: RcppArmadillo
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
query "Chabbert_2015" returned no matches
Quitting from lines 40-67 (DChIPRepVignette.Rmd)
Error: processing vignette 'DChIPRepVignette.Rmd' failed with diagnostics:
argument "bibtype" is missing, with no default
Execution halted