Back to BiocCheck report for a small subset of BioC 3.18 packages

This page was generated on 2023-10-24 11:15:02 -0400 (Tue, 24 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4818
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 51/92HostnameOS / ArchBIOCCHECK
interactiveDisplayBase 1.39.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2023-10-24 10:00:01 -0400 (Tue, 24 Oct 2023)
git_url: https://git.bioconductor.org/packages/interactiveDisplayBase
git_branch: devel
git_last_commit: ed9930b
git_last_commit_date: 2023-04-25 10:33:33 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  WARNINGS  

BIOCCHECK results for interactiveDisplayBase on nebbiolo2


To the developers/maintainers of the interactiveDisplayBase package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: interactiveDisplayBase
Version: 1.39.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('interactiveDisplayBase_1.39.0.tar.gz')"
StartedAt: 2023-10-24 10:47:17 -0400 (Tue, 24 Oct 2023)
EndedAt: 2023-10-24 10:47:34 -0400 (Tue, 24 Oct 2023)
EllapsedTime: 16.6 seconds
RetCode: None
Status:   WARNINGS  
Warnings: 3

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('interactiveDisplayBase_1.39.0.tar.gz')"
###
##############################################################################
##############################################################################


─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: interactiveDisplayBase
─ PackageVersion: 1.39.0
─ sourceDir: /tmp/Rtmpr1UqcM/file38d1379cf0d63/interactiveDisplayBase
─ installDir: /tmp/Rtmpr1UqcM/file38d137235067f5
─ BiocCheckDir: /home/biocbuild/bbs-3.18-bioc-testing/meat/interactiveDisplayBase.BiocCheck
─ platform: unix
─ isTarBall: TRUE

* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
    * NOTE: Update R version dependency from 2.10 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
    * WARNING: Use biocViews from one category only (one of Software,
      ExperimentData, AnnotationData, Workflow)
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
    * WARNING: Description field in the DESCRIPTION file is too concise
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
    * NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R'
      with 'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommeded fields in DESCRIPTION...
    * NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
    * WARNING: Vignette(s) missing Vignette metadata. See
      http://r-pkgs.had.co.nz/vignettes.html
    * NOTE: 'sessionInfo' not found in vignette(s)
* Checking package installation calls in R code...
* Checking for library/require of interactiveDisplayBase...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
    * NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 1
      times)
* Checking function lengths...
    * NOTE: The recommended function length is 50 lines or less. There
      is 1 function greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
    * NOTE: Consider adding unit tests. We strongly encourage them. See
      https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 7 lines (2%) are > 80 characters
      long.
    * NOTE: Consider multiples of 4 spaces for line indents; 30 lines
      (10%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer email is ok.

─ BiocCheck results ──
0 ERRORS | 3 WARNINGS | 10 NOTES

See the interactiveDisplayBase.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.