Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:47 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 26/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomaRt 2.58.2  (landing page)
Mike Smith
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/biomaRt
git_branch: RELEASE_3_18
git_last_commit: d8a58e6
git_last_commit_date: 2024-01-30 05:36:21 -0500 (Tue, 30 Jan 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

BUILD results for biomaRt on nebbiolo2


To the developers/maintainers of the biomaRt package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biomaRt
Version: 2.58.2
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data biomaRt
StartedAt: 2024-03-08 15:41:53 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:44:31 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 157.9 seconds
RetCode: 0
Status:   OK  
PackageFile: biomaRt_2.58.2.tar.gz
PackageFileSize: 654.1 KiB

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data biomaRt
###
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* checking for file ‘biomaRt/DESCRIPTION’ ... OK
* preparing ‘biomaRt’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘biomaRt_2.58.2.tar.gz’
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid uid value replaced by that for user 'nobody''
Warning: invalid uid value replaced by that for user 'nobody'
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid gid value replaced by that for user 'nobody''
Warning: invalid gid value replaced by that for user 'nobody'