| Back to First build/check report with an "external build node" |
This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| xps15 | Linux (Ubuntu 23.04) | x86_64 | 4.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" | 544 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the affy package: Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2/91 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| affy 1.79.0 (landing page) Rafael A. Irizarry
| xps15 | Linux (Ubuntu 23.04) / x86_64 | OK | ERROR | skipped | ||||||||
| Package: affy |
| Version: 1.79.0 |
| Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL affy |
| StartedAt: 2023-06-01 12:21:09 -0700 (Thu, 01 Jun 2023) |
| EndedAt: 2023-06-01 12:21:19 -0700 (Thu, 01 Jun 2023) |
| EllapsedTime: 10.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL affy ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-testing/Rlibs’ * installing *source* package ‘affy’ ... ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... gcc -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 12.2.0-17ubuntu1) 12.2.0’ gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hpages/bbs-3.18-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c chipbackground.c -o chipbackground.o gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hpages/bbs-3.18-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c getall_locations.c -o getall_locations.o gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hpages/bbs-3.18-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c mas5calls.c -o mas5calls.o gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hpages/bbs-3.18-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c rma2.c -o rma2.o gcc -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hpages/bbs-3.18-bioc-testing/Rlibs/preprocessCore/include' -I/usr/local/include -g -O2 -Wall -fpic -g -O2 -Wall -c rma_common.c -o rma_common.o gcc -shared -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz installing to /home/hpages/bbs-3.18-bioc-testing/Rlibs/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy)