Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-03-20 11:05:18 -0400 (Mon, 20 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4516 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4295 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the tscR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tscR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2105/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
tscR 1.10.0 (landing page) Fernando Pérez-Sanz
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: tscR |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tscR.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings tscR_1.10.0.tar.gz |
StartedAt: 2023-03-18 00:44:17 -0400 (Sat, 18 Mar 2023) |
EndedAt: 2023-03-18 00:47:43 -0400 (Sat, 18 Mar 2023) |
EllapsedTime: 206.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: tscR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:tscR.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings tscR_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/tscR.Rcheck’ * using R version 4.2.2 (2022-10-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘tscR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tscR’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tscR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘fcolor’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘tscR.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.16-bioc/meat/tscR.Rcheck/00check.log’ for details.
tscR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL tscR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’ * installing *source* package ‘tscR’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tscR.c -o tscR.o gcc -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tscR_init.c -o tscR_init.o gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o tscR.so tscR.o tscR_init.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.16-bioc/R/library/00LOCK-tscR/00new/tscR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tscR)
tscR.Rcheck/tests/testthat.Rout
R version 4.2.2 (2022-10-31) -- "Innocent and Trusting" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(tscR) Loading required package: dplyr Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union > > test_check("tscR") [ FAIL 0 | WARN 1 | SKIP 0 | PASS 16 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 16 ] > > proc.time() user system elapsed 10.252 1.742 11.578
tscR.Rcheck/tscR-Ex.timings
name | user | system | elapsed | |
combineCluster | 0.087 | 0.013 | 0.094 | |
frechetDist | 1.359 | 0.096 | 1.446 | |
frechetDistC | 0.031 | 0.000 | 0.031 | |
getClusters | 0.026 | 0.026 | 0.045 | |
importFromSE | 0.165 | 0.029 | 0.187 | |
imputeSenatorToData | 0.101 | 0.008 | 0.107 | |
imputeSenators | 0.058 | 0.004 | 0.061 | |
plotCluster | 0.052 | 0.008 | 0.059 | |
plotClusterSenator | 0.075 | 0.004 | 0.078 | |
slopeDist | 0.002 | 0.000 | 0.002 | |
tscR | 0.059 | 0.021 | 0.075 | |