Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:23 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the rhdf5filters package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5filters.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1672/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rhdf5filters 1.10.1 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: rhdf5filters |
Version: 1.10.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rhdf5filters.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rhdf5filters_1.10.1.tar.gz |
StartedAt: 2023-04-10 22:14:11 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 22:14:38 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 27.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rhdf5filters.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rhdf5filters.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rhdf5filters_1.10.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/rhdf5filters.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rhdf5filters/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rhdf5filters’ version ‘1.10.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rhdf5filters’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.16-bioc/meat/rhdf5filters.Rcheck/00check.log’ for details.
rhdf5filters.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL rhdf5filters ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘rhdf5filters’ ... ** using staged installation configuring the BLOSC filter... x86_CPU=true checking for gcc... clang -mmacosx-version-min=10.13 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -mmacosx-version-min=10.13 accepts -g... yes checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed checking whether C compiler accepts -msse2... yes checking whether C compiler accepts -mavx2... yes checking for gcc __builtin_cpu_init function... (cached) true checking for x86 sse2 instruction support... yes checking for x86 avx2 instruction support... yes configure: creating ./config.status config.status: creating src/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/blosc/Makefile configure: BZIP2_LIB=bzip2/libH5Zbz2.so configure: BLOSC_LIB=blosc/libH5Zblosc.so configure: LZF_LIB=lzf/libH5Zlzf.so configure: creating ./config.status config.status: creating src/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/blosc/Makefile config.status: creating src/Makevars ** libs make -C blosc make -C lib/snappy-1.1.1 clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -c snappy.cc snappy.cc:567:13: warning: unused function 'ComputeTable' [-Wunused-function] static void ComputeTable() { ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -c snappy-c.cc clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -c snappy-sinksource.cc clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -c snappy-stubs-internal.cc make -C lib/lz4-1.9.2 clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lz4.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lz4hc.c make -C lib/zstd-1.4.5 clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/debug.c -o common/debug.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/entropy_common.c -o common/entropy_common.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/error_private.c -o common/error_private.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/fse_decompress.c -o common/fse_decompress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -I. -c common/pool.c -o common/pool.o -o common/pool.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/threading.c -o common/threading.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/xxhash.c -o common/xxhash.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/zstd_common.c -o common/zstd_common.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/fse_compress.c -o compress/fse_compress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/hist.c -o compress/hist.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/huf_compress.c -o compress/huf_compress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress.c -o compress/zstd_compress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o compress/zstd_compress_superblock.c:412:12: warning: variable 'litLengthSum' set but not used [-Wunused-but-set-variable] size_t litLengthSum = 0; ^ 1 warning generated. clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_fast.c -o compress/zstd_fast.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_lazy.c -o compress/zstd_lazy.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_ldm.c -o compress/zstd_ldm.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_opt.c -o compress/zstd_opt.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/huf_decompress.c -o decompress/huf_decompress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o make -C lib/blosc-1.20.1 all clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c bitshuffle-avx2.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c shuffle-avx2.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c bitshuffle-sse2.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c shuffle-sse2.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c bitshuffle-generic.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c shuffle-generic.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -DSHUFFLE_SSE2_ENABLED -DSHUFFLE_AVX2_ENABLED -c shuffle.c In file included from shuffle.c:12: ./shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ ./shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c blosclz.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c blosc.c blosc.c:737:11: warning: variable 'ctbytes' set but not used [-Wunused-but-set-variable] int32_t ctbytes = 0; /* number of compressed bytes in block */ ^ 1 warning generated. clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -mavx2 -c fastcopy.c rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/bitshuffle-avx2.o lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/shuffle-avx2.o lib/blosc-1.20.1/shuffle-sse2.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/bitshuffle-sse2.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o lib/zstd-1.4.5/common/debug.o lib/zstd-1.4.5/common/entropy_common.o lib/zstd-1.4.5/common/error_private.o lib/zstd-1.4.5/common/fse_decompress.o lib/zstd-1.4.5/common/pool.o lib/zstd-1.4.5/common/threading.o lib/zstd-1.4.5/common/xxhash.o lib/zstd-1.4.5/common/zstd_common.o lib/zstd-1.4.5/compress/fse_compress.o lib/zstd-1.4.5/compress/hist.o lib/zstd-1.4.5/compress/huf_compress.o lib/zstd-1.4.5/compress/zstd_compress.o lib/zstd-1.4.5/compress/zstd_compress_literals.o lib/zstd-1.4.5/compress/zstd_compress_sequences.o lib/zstd-1.4.5/compress/zstd_compress_superblock.o lib/zstd-1.4.5/compress/zstd_double_fast.o lib/zstd-1.4.5/compress/zstd_fast.o lib/zstd-1.4.5/compress/zstd_lazy.o lib/zstd-1.4.5/compress/zstd_ldm.o lib/zstd-1.4.5/compress/zstd_opt.o lib/zstd-1.4.5/compress/zstdmt_compress.o lib/zstd-1.4.5/decompress/huf_decompress.o lib/zstd-1.4.5/decompress/zstd_ddict.o lib/zstd-1.4.5/decompress/zstd_decompress.o lib/zstd-1.4.5/decompress/zstd_decompress_block.o ranlib libblosc.a clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c -o H5Zblosc.o H5Zblosc.c \ -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I./lib/blosc-1.20.1 H5Zblosc.c:96:10: warning: unused variable 'errmsg' [-Wunused-variable] char errmsg[256]; ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -L/usr/local/lib -shared -o libH5Zblosc.so H5Zblosc.o \ libblosc.a -lz make -C bzip2 make -C bzip2-1.0.8 clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c blocksort.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c huffman.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c crctable.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c randtable.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c compress.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c decompress.c clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c bzlib.c rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o ranlib libbz2.a clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -shared H5Zbzip2.c -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" \ -I./bzip2-1.0.8/ ./bzip2-1.0.8/libbz2.a -L/usr/local/lib -o libH5Zbz2.so make -C lzf make -C lzf clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lzf_c.c In file included from lzf_c.c:37: ./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] #if !STRICT_ALIGN ^ ./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ ./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] ./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ lzf_c.c:154:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] #if STRICT_ALIGN ^ ./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ lzf_c.c:154:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] ./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ 4 warnings generated. clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lzf_d.c In file included from lzf_d.c:37: ./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] #if !STRICT_ALIGN ^ ./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ ./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined] ./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN' # define STRICT_ALIGN !(defined(__i386) || defined (__amd64)) ^ 2 warnings generated. rm -f liblzf.a ar cq liblzf.a lzf_c.o lzf_d.o ranlib liblzf.a clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -shared H5Zlzf.c -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" \ -I./lzf/ ./lzf/liblzf.a -L/usr/local/lib -o libH5Zlzf.so mkdir -p "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" cp bzip2/libH5Zbz2.so "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" cp blosc/libH5Zblosc.so "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" cp lzf/libH5Zlzf.so "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/" clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include" -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c rhdf5filters.c -o rhdf5filters.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rhdf5filters.so rhdf5filters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5filters)
rhdf5filters.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(rhdf5filters) > > test_check("rhdf5filters") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 315 ] > > proc.time() user system elapsed 3.159 0.392 3.607
rhdf5filters.Rcheck/rhdf5filters-Ex.timings
name | user | system | elapsed | |
hdf5_plugin_path | 0.000 | 0.000 | 0.001 | |