| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:06:19 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the pcaMethods package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pcaMethods.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1450/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pcaMethods 1.90.0 (landing page) Henning Redestig
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: pcaMethods |
| Version: 1.90.0 |
| Command: rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pcaMethods_1.90.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R pcaMethods.buildbin-libdir |
| StartedAt: 2023-04-10 23:56:28 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 23:56:52 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 24.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: pcaMethods_1.90.0.tgz |
| PackageFileSize: 1.424 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pcaMethods_1.90.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R pcaMethods.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pcaMethods.buildbin-libdir pcaMethods_1.90.0.tar.gz' >>>>>>> * installing *source* package ‘pcaMethods’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c nipals.cpp -o nipals.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pcaMethods.so RcppExports.o nipals.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/pcaMethods.buildbin-libdir/00LOCK-pcaMethods/00new/pcaMethods/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘loadings’ in package ‘pcaMethods’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaMethods) >>>>>>> >>>>>>> FIXING LINKS FOR pcaMethods.buildbin-libdir/pcaMethods/libs/pcaMethods.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/pcaMethods.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/pcaMethods.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/pcaMethods.so"