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This page was generated on 2022-07-07 11:11:08 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for flowVS on kjohnson


To the developers/maintainers of the flowVS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowVS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 693/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowVS 1.29.0  (landing page)
Ariful Azad
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/flowVS
git_branch: master
git_last_commit: d296f73
git_last_commit_date: 2022-04-26 12:15:05 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  OK    ERROR  skippedskipped

Summary

Package: flowVS
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowVS
StartedAt: 2022-07-06 21:10:11 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 21:12:39 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 147.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowVS
###
##############################################################################
##############################################################################


* checking for file ‘flowVS/DESCRIPTION’ ... OK
* preparing ‘flowVS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘flowVS.Rnw’ using knitr
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
Loading required package: flowStats
Warning: replacing previous import 'flowViz::contour' by 'graphics::contour' when loading 'flowStats'
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Warning in optimize(afun, b, maximum = TRUE) :
  NA/Inf replaced by maximum positive value
Quitting from lines 173-176 (flowVS.Rnw) 
Error: processing vignette 'flowVS.Rnw' failed with diagnostics:
there is no package called 'vsn'
--- failed re-building ‘flowVS.Rnw’

SUMMARY: processing the following file failed:
  ‘flowVS.Rnw’

Error: Vignette re-building failed.
Execution halted