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This page was generated on 2022-07-07 11:11:08 -0400 (Thu, 07 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4148
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4160
kjohnsonmacOS 12.4 Montereyarm644.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" 3115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for flowPeaks on kjohnson


To the developers/maintainers of the flowPeaks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 683/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.43.0  (landing page)
Yongchao Ge
Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: master
git_last_commit: ba7fca2
git_last_commit_date: 2022-04-26 11:11:14 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnsonmacOS 12.4 Monterey / arm64  ERROR    ERROR  skippedskipped

Summary

Package: flowPeaks
Version: 1.43.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPeaks
StartedAt: 2022-07-06 21:06:22 -0400 (Wed, 06 Jul 2022)
EndedAt: 2022-07-06 21:06:39 -0400 (Wed, 06 Jul 2022)
EllapsedTime: 16.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPeaks
###
##############################################################################
##############################################################################


* checking for file ‘flowPeaks/DESCRIPTION’ ... OK
* preparing ‘flowPeaks’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c Rpack.cpp -o Rpack.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c Rregistrate.cpp -o Rregistrate.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp:803:5: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses]
        if(!triangulate & plot & !debug)
           ^            ~
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses after the '!' to evaluate the bitwise operator first
        if(!triangulate & plot & !debug)
           ^
            (                 )
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses around left hand side expression to silence this warning
        if(!triangulate & plot & !debug)
           ^
           (           )
1 warning generated.
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c flowPeaks.cpp -o flowPeaks.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c func_collect.cpp -o func_collect.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c kd_tree.cpp -o kd_tree.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c kmns.cpp -o kmns.o
clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file /usr/local/lib/libgslcblas.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
ld: warning: ignoring file /usr/local/lib/libgsl.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
installing to /private/tmp/RtmpKXpoU3/Rinsta06b55f1e4/00LOCK-flowPeaks/00new/flowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘flowPeaks’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/private/tmp/RtmpKXpoU3/Rinsta06b55f1e4/00LOCK-flowPeaks/00new/flowPeaks/libs/flowPeaks.so':
  dlopen(/private/tmp/RtmpKXpoU3/Rinsta06b55f1e4/00LOCK-flowPeaks/00new/flowPeaks/libs/flowPeaks.so, 0x0006): symbol not found in flat namespace '_gsl_blas_ddot'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpKXpoU3/Rinsta06b55f1e4/flowPeaks’
      -----------------------------------
ERROR: package installation failed