Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:06:07 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the fcScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 667/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
fcScan 1.12.0 (landing page) Pierre Khoueiry
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
Package: fcScan |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.12.0.tar.gz |
StartedAt: 2023-04-10 20:11:32 -0400 (Mon, 10 Apr 2023) |
EndedAt: 2023-04-10 20:15:42 -0400 (Mon, 10 Apr 2023) |
EllapsedTime: 250.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: fcScan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/fcScan.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘fcScan/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘fcScan’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘fcScan’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("fcScan") Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb 17 entries loaded Running getCluster using 1 threads Time difference of 0.198379 secs Sites in condition do not match sites in data 3 entries loaded Running getCluster using 1 threads Time difference of 0.08451414 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.07922387 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09326911 secs 17 entries loaded Running getCluster using 1 threads No cluster found 17 entries loaded Running getCluster using 1 threads Time difference of 0.108155 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08463001 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1031361 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08184791 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09137297 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1158071 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.07947707 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.07881808 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.06895399 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.06779504 secs 10 entries loaded Running getCluster using 1 threads Time difference of 0.08068609 secs 10 entries loaded Running getCluster using 1 threads No cluster found 10 entries loaded Running getCluster using 1 threads Time difference of 0.08076406 secs 16 entries loaded Running getCluster using 1 threads Time difference of 0.06784701 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.08482099 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.07906699 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.06781507 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.07710695 secs 6 entries loaded Running getCluster using 1 threads Time difference of 0.08948898 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.0730629 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09210491 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08041096 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08894014 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08819795 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.07254004 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09009504 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.107754 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1037159 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1159301 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1178799 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08700013 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1239069 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1074102 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08944798 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08524299 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.08501315 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09673095 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.09904003 secs 17 entries loaded Running getCluster using 1 threads Time difference of 0.1272571 secs RUNIT TEST PROTOCOL -- Mon Apr 10 20:15:33 2023 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : fcScan RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 15.642 1.003 17.217
fcScan.Rcheck/fcScan-Ex.timings
name | user | system | elapsed | |
getCluster | 0.242 | 0.011 | 0.269 | |